YRC Public Data Repository - Protein Structure Prediction

Protein:	UXUR_ECOLI
Organism:	Escherichia coli
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UXUR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|27367455, gi\|... - gi\|27367455\|ref\|NP_762982.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359024\|gb\|AAO... gi\|37201794, gi\|... - gi\|37677249\|ref\|NP_937645.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37201794\|dbj\|BA...	209.0	[0..4]	[257..11]
gi\|25325760 - pir\|\|F86130 regulator for uxu operon [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|15804899, gi\|... - gi\|15804899\|ref\|NP_290940.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli O157:H7 ED...	204.0	[0..1]	[257..1]
gi\|218698167, gi... - gi\|218698167\|ref\|YP_002405834.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli 55989]... gi\|218692725, gi... - gi\|218692725\|ref\|YP_002400937.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli ED1a],... gi\|209749264, gi... - pir\|\|C91289 regulator for uxu operon [imported] - Escherichia coli (strain O157:H7, substrain RIMD ... gi\|13364761, gi\|... - gi\|15834537\|ref\|NP_313310.1\| UxuR [Escherichia coli O157:H7], gi\|13364761\|dbj\|BAB38706.1\| regulator ... gi\|195937334 - gi\|195937334\|ref\|ZP_03082716.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli O157:H7... gi\|168797892, gi... - gi\|189379453\|gb\|EDU97869.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC... gi\|208734348, gi... - gi\|208813071\|ref\|ZP_03254400.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str... gi\|208727175, gi... - gi\|208807374\|ref\|ZP_03249711.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str... gi\|209161581, gi... - gi\|209400181\|ref\|YP_002273849.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 st... gi\|208821761, gi... - gi\|208821761\|ref\|ZP_03262081.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str... gi\|217325799, gi... - gi\|217325799\|ref\|ZP_03441883.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str... gi\|209915047, gi... - gi\|209921788\|ref\|YP_002295872.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli SE11],... gi\|75179383, gi\|... - gi\|75179383\|ref\|ZP_00699387.1\| COG2186: Transcriptional regulators [Shigella boydii BS512], gi\|18773... gi\|75198139, gi\|... - gi\|75198139\|ref\|ZP_00708209.1\| COG2186: Transcriptional regulators [Escherichia coli HS], gi\|1571637... gi\|188491192, gi... - gi\|75515507\|ref\|ZP_00737664.1\| COG2186: Transcriptional regulators [Escherichia coli 53638], gi\|1884... gi\|81248082, gi\|... - gi\|82546671\|ref\|YP_410618.1\| DNA-binding transcriptional repressor UxuR [Shigella boydii Sb227], gi\|... gi\|188016188, gi... - gi\|188016188\|gb\|EDU54310.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC... gi\|189368949, gi... - gi\|189368949\|gb\|EDU87365.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC... gi\|189357888, gi... - gi\|189357888\|gb\|EDU76307.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC... gi\|168773969, gi... - gi\|187770226\|gb\|EDU34070.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC... gi\|168766601, gi... - gi\|189363906\|gb\|EDU82325.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC... gi\|168784963, gi... - gi\|189374912\|gb\|EDU93328.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC... gi\|189000701, gi... - gi\|189000701\|gb\|EDU69687.1\| transcriptional regulator, GntR family [Escherichia coli O157:H7 str. EC... gi\|254037346, gi... - gi\|254037346\|ref\|ZP_04871423.1\| transcriptional regulator [Escherichia sp. 1_1_43], gi\|226840452\|gb\|... gi\|254595726, gi... - gi\|254796326\|ref\|YP_003081163.1\| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str... gi\|13364761, gi\|... - gi\|15834537\|ref\|NP_313310.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli O157:H7 st...	204.0	[0..1]	[257..1]
gi\|193070145, gi... - gi\|75235102\|ref\|ZP_00719358.1\| COG2186: Transcriptional regulators [Escherichia coli E110019], gi\|19... gi\|218368269, gi... - gi\|218561500\|ref\|YP_002394413.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli S88], ...	203.0	[0..1]	[257..1]
gi\|194426561, gi... - gi\|75212114\|ref\|ZP_00712154.1\| COG2186: Transcriptional regulators [Escherichia coli B171], gi\|19442...	203.0	[0..1]	[257..1]
gi\|117626631, gi... - gi\|117626631\|ref\|YP_859954.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli APEC O1],... gi\|91075542, gi\|... - gi\|91213968\|ref\|YP_543954.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli UTI89], gi...	203.0	[0..1]	[257..1]
gi\|73858248, gi\|... - gi\|74314771\|ref\|YP_313190.1\| DNA-binding transcriptional repressor UxuR [Shigella sonnei Ss046], gi\|...	203.0	[0..1]	[257..1]
gi\|110644767, gi... - gi\|110644767\|ref\|YP_672497.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli 536], gi\|... gi\|75242242, gi\|... - gi\|75242242\|ref\|ZP_00726004.1\| COG2186: Transcriptional regulators [Escherichia coli F11], gi\|191170... gi\|215489647, gi... - gi\|215489647\|ref\|YP_002332078.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli O127:H... gi\|26251212, gi\|... - gi\|26251212\|ref\|NP_757252.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli CFT073], g... gi\|52420909 - gi\|52420909\|emb\|CAH55788.1\| regulator of uxu operon [Escherichia coli] gi\|227885186, gi... - gi\|227885186\|ref\|ZP_04002991.1\| DNA-binding transcriptional repressor UxuR [Escherichia coli 83972],...	202.0	[0..1]	[257..1]
gi\|191167147, gi... - gi\|75229722\|ref\|ZP_00716255.1\| COG2186: Transcriptional regulators [Escherichia coli B7A], gi\|191167... gi\|194423240, gi... - gi\|83586651\|ref\|ZP_00925283.1\| COG2186: Transcriptional regulators [Escherichia coli 101-1], gi\|1944...	202.0	[0..1]	[256..1]
gi\|75189044, gi\|... - gi\|75189044\|ref\|ZP_00702311.1\| COG2186: Transcriptional regulators [Escherichia coli E24377A], gi\|15...	202.0	[0..1]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSATSAQRP YQEVGAMIRD LIIKTPYNPG ERLPPEREIA EMLDVTRTVV REALIMLEIK  60
   61 GLVEVRRGAG IYVLDNSGSQ NTDSPDANVC NDAGPFELLQ ARQLLESNIA EFAALQATRE 120
  121 DIVKMRQALQ LEERELASSA PGSSESGDMQ FHLAIAEATH NSMLVELFRQ SWQWRENNPM 180
  181 WIQLHSHLDD SLYRKEWLGD HKQILAALIK KDARAAKLAM WQHLENVKQR LLEFSNVDDI 240
  241 YFDGYLFDSW PLDKVDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2di3A
Description:	No description for 2di3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits