YRC Public Data Repository - Protein Structure Prediction

Protein:	UVRY_ECOLI
Organism:	Escherichia coli
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UVRY_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|98660596 - gi\|98660596\|dbj\|GAA02177.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	182.0	[0..3]	[212..7]
gi\|22299907, gi\|... - gi\|22299907\|ref\|NP_683154.1\| two-component response regulator [Thermosynechococcus elongatus BP-1], ...	181.0	[0..3]	[211..11]
gi\|134051275, gi... - gi\|88945490\|ref\|ZP_01148660.1\| Response regulator receiver [Desulfotomaculum reducens MI-1], gi\|8892...	180.0	[0..1]	[213..1]
gi\|89895322, gi\|... - gi\|89895322\|ref\|YP_518809.1\| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51], gi\|893...	179.0	[0..1]	[218..1]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	178.0	[0..3]	[212..5]
gi\|207090866 - gi\|207090866\|gb\|EDZ68137.1\| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus... gi\|224411212, gi... - gi\|254434533\|ref\|ZP_05048041.1\| phosphate regulon transcriptional regulatory protein PhoB [Nitrosoco... gi\|76884178, gi\|... - gi\|77165864\|ref\|YP_344389.1\| phosphate regulon transcriptional regulatory protein phoB [Nitrosococcu...	178.0	[0..3]	[211..4]
gi\|85859021, gi\|... - gi\|85859021\|ref\|YP_461223.1\| response regulator [Syntrophus aciditrophicus SB], gi\|85722112\|gb\|ABC77...	177.0	[0..3]	[213..16]
gi\|56910719, gi\|... - gi\|56964476\|ref\|YP_176207.1\| two-component response regulator of alkaline phosphatase synthesis [Bac...	177.0	[0..3]	[218..4]
gi\|47556738, gi\|... - gi\|47566185\|ref\|ZP_00237213.1\| two-component response regulator [Bacillus cereus G9241], gi\|47556738...	177.0	[0..3]	[212..5]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINVLLVDDH ELVRAGIRRI LEDIKGIKVV GEASCGEDAV KWCRTNAVDV VLMDMSMPGI  60
   61 GGLEATRKIA RSTADVKIIM LTVHTENPLP AKVMQAGAAG YLSKGAAPQE VVSAIRSVYS 120
  121 GQRYIASDIA QQMALSQIEP EKTESPFASL SERELQIMLM ITKGQKVNEI SEQLNLSPKT 180
  181 VNSYRYRMFS KLNIHGDVEL THLAIRHGLC NAETLSSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.045757
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits