YRC Public Data Repository - Protein Structure Prediction

Protein:	UUP_ECOLI
Organism:	Escherichia coli
Length:	635 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UUP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110641138, gi... - gi\|110641138\|ref\|YP_668868.1\| ABC transporter ATPase component [Escherichia coli 536], gi\|110342730\|... gi\|191172066, gi... - gi\|191172066\|ref\|ZP_03033610.1\| ABC transporter, ATP-binding protein [Escherichia coli F11], gi\|1909...	566.0	[0..1]	[635..1]
gi\|13360493, gi\|... - gi\|15830287\|ref\|NP_309060.1\| ABC transporter ATPase component [Escherichia coli O157:H7 str. Sakai],... gi\|13360493, gi\|... - gi\|15830287\|ref\|NP_309060.1\| putative ATP-binding component of a transport system [Escherichia coli ... gi\|209774518, gi... - pir\|\|A90758 hypothetical protein ECs1033 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|254591549, gi... - gi\|254792149\|ref\|YP_003076986.1\| DNA-binding ABC ATPase [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|217320932, gi... - gi\|217324711\|ref\|ZP_03440795.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|208728357, gi... - gi\|208808556\|ref\|ZP_03250893.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|208815442, gi... - gi\|208815442\|ref\|ZP_03256621.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|208738123, gi... - gi\|208822638\|ref\|ZP_03262957.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|209399572, gi... - gi\|209399572\|ref\|YP_002269618.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str.... gi\|189366816, gi... - gi\|189366816\|gb\|EDU85232.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC45... gi\|188998783, gi... - gi\|188998783\|gb\|EDU67769.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC40... gi\|189372599, gi... - gi\|189372599\|gb\|EDU91015.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC86... gi\|195939637 - gi\|195939637\|ref\|ZP_03085019.1\| ABC transporter ATPase component [Escherichia coli O157:H7 str. EC40... gi\|168751212, gi... - gi\|188014708\|gb\|EDU52830.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC41...	566.0	[0..1]	[635..1]
gi\|26246970, gi\|... - gi\|26246970\|ref\|NP_753010.1\| ABC transporter ATPase component [Escherichia coli CFT073], gi\|26107370... gi\|227884092, gi... - gi\|227884092\|ref\|ZP_04001897.1\| ABC superfamily ATP binding cassette transporter ABC protein [Escher...	565.0	[0..1]	[635..1]
gi\|91071618, gi\|... - gi\|91210044\|ref\|YP_540030.1\| ABC transporter ATPase component [Escherichia coli UTI89], gi\|91071618\|... gi\|117623160, gi... - gi\|117623160\|ref\|YP_852073.1\| ABC transporter ATPase component [Escherichia coli APEC O1], gi\|115512... gi\|218557847, gi... - gi\|218557847\|ref\|YP_002390760.1\| ABC transporter ATPase component [Escherichia coli S88], gi\|2183646... gi\|237707068, gi... - gi\|237707068\|ref\|ZP_04537549.1\| ABC transporter [Escherichia sp. 3_2_53FAA], gi\|226898278\|gb\|EEH8453...	565.0	[0..1]	[635..1]
gi\|24112362, gi\|... - gi\|24112362\|ref\|NP_706872.1\| ABC transporter ATPase component [Shigella flexneri 2a str. 301], gi\|24... gi\|30062486, gi\|... - gi\|30062486\|ref\|NP_836657.1\| ABC transporter ATPase component [Shigella flexneri 2a str. 2457T], gi\|...	564.0	[0..1]	[635..1]
gi\|110804965, gi... - gi\|110804965\|ref\|YP_688485.1\| ABC transporter ATPase component [Shigella flexneri 5 str. 8401], gi\|1...	564.0	[0..1]	[635..1]
gi\|25384264 - pir\|\|G85621 hypothetical protein uup [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|15800808, gi\|... - gi\|15800808\|ref\|NP_286824.1\| ABC transporter ATPase component [Escherichia coli O157:H7 EDL933], gi\|...	562.0	[0..1]	[635..1]
gi\|81246138, gi\|... - gi\|82544727\|ref\|YP_408674.1\| ABC transporter ATPase component [Shigella boydii Sb227], gi\|81246138\|g...	558.0	[0..1]	[635..1]
gi\|16759943 - gi\|16759943\|ref\|NP_455560.1\| ABC transporter ATPase component [Salmonella enterica subsp. enterica s... gi\|16502237, gi\|... - gi\|25384386\|pir\|\|AI0625 ABC transporter ATP-binding protein STY1083 [imported] - Salmonella enterica... gi\|29137915, gi\|... - gi\|29142285\|ref\|NP_805627.1\| ABC transporter ATPase component [Salmonella enterica subsp. enterica s... gi\|214001678 - gi\|214001678\|ref\|ZP_03412413.1\| ABC transporter ATPase component [Salmonella enterica subsp. enteric...	558.0	[0..1]	[635..1]
gi\|75241017 - gi\|75241017\|ref\|ZP_00724906.1\| COG0488: ATPase components of ABC transporters with duplicated ATPase...	557.0	[0..6]	[635..1]

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Predicted Domain #1

Region A:
Residues: [1-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLISMHGAW LSFSDAPLLD NAELHIEDNE RVCLVGRNGA GKSTLMKILN REQGLDDGRI  60
   61 IYEQDLIVAR LQQDPPRNVE GSVYDFVAEG IEEQAEYLKR YHDISRLVMN DPSEKNLNEL 120
  121 AKVQEQLDHH NLWQLENRIN EVLAQLGLDP NVALSSLSGG WLRKAALGRA LVSNPRVLLL 180
  181 DEPTNHLDIE TIDWLEGFLK TFNGTIIFIS HDRSFIRNMA TRIVDLDRGK LVTYPGNYDQ 240
  241 YLLEKEEALR VEELQNAEFD RKLAQEEVWI RQGIKARRTR NEGRVRALKA MRRERGERRE 300
  301 VMGTAKMQVE EASRSGKIVF EMEDVCYQVN GKQLVKDFSA QVLRGDKIAL IGPNGCGKTT 360
  361 LLKLMLGQLQ ADSGRIHVGT KLEVAYFDQH RAELDPDKTV MDNLAEGKQE VMVNGKPRHV 420
  421 LGYLQDFLFH PKRAMTPVRA LSGGERNRLL LARLFLKPSN LLILDEPTND LDVETLELLE 480
  481 ELIDSYQGTV LLVSHDRQFV DNTVTECWIF EGGGKIGRYV G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [522-635]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYHDARGQQE QYVALKQPAV KKTEEAAAAK AETVKRSSSK LSYKLQRELE QLPQLLEDLE  60
   61 AKLEALQTQV ADASFFSQPH EQTQKVLADM AAAEQELEQA FERWEYLEAL KNGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits