YRC Public Data Repository - Protein Structure Prediction

Protein:	USPG_ECOLI
Organism:	Escherichia coli
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for USPG_ECOLI.

Description	E-value	Query Range	Subject Range
Y531_METJA - Uncharacterized protein MJ0531 OS=Methanocaldococcus jannaschii GN=MJ0531 PE=3 SV=1 Y531_METJA - Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	136.0	[0..1]	[142..25]
gi\|72395196, gi\|... - gi\|73668034\|ref\|YP_304049.1\| universal stress protein [Methanosarcina barkeri str. Fusaro], gi\|72395...	129.0	[0..2]	[142..6]
gi\|68212208, gi\|... - gi\|91774262\|ref\|YP_566954.1\| hypothetical protein Mbur_2350 [Methanococcoides burtonii DSM 6242], gi...	128.0	[0..1]	[142..5]
gi\|48846987, gi\|... - gi\|78223874\|ref\|YP_385621.1\| hypothetical protein Gmet_2678 [Geobacter metallireducens GS-15], gi\|78...	128.0	[0..2]	[142..4]
gi\|39996220, gi\|... - gi\|39996220\|ref\|NP_952171.1\| universal stress protein [Geobacter sulfurreducens PCA], gi\|39982985\|gb...	125.0	[0..2]	[142..4]
gi\|91201825 - gi\|91201825\|emb\|CAJ74885.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	125.0	[0..3]	[142..516]
gi\|71480888, gi\|... - gi\|71480888\|ref\|ZP_00660597.1\| UspA [Prosthecochloris vibrioformis DSM 265], gi\|71284255\|gb\|EAO16073...	124.0	[0..1]	[142..1]
gi\|21229179, gi\|... - gi\|21229179\|ref\|NP_635101.1\| putative transcriptional regulator [Methanosarcina mazei Go1], gi\|20907...	124.0	[0..1]	[142..5]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKTIIMPVD VFEMELSDKA VRHAEFLAQD DGVIHLLHVL PGSASLSLHR FAADVRRFEE  60
   61 HLQHEAQERL QTMVSHFTID PSRIKQHVRF GSVRDEVNEL AEELGADVVV IGSRNPSIST 120
  121 HLLGSNASSV IRHANLPVLV VR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1mjhA
Description:	"Hypothetical" protein MJ0577
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.062439821475123	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: