YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPR_PASMU
Organism:	Pasteurella multocida
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPR_PASMU.

Description	E-value	Query Range	Subject Range
TRPR_VIBVU - Trp operon repressor homolog OS=Vibrio vulnificus GN=trpR PE=3 SV=1 TRPR_VIBVU - Trp operon repressor homolog OS=Vibrio vulnificus (strain CMCP6) GN=trpR PE=3 SV=1 TRPR_VIBVY - Trp operon repressor homolog OS=Vibrio vulnificus (strain YJ016) GN=trpR PE=3 SV=1	122.0	[0..1]	[101..1]
TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii GN=trpR PE=3 SV=1 TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / T...	121.0	[0..5]	[97..14]
gi\|227080881, gi... - gi\|227080881\|ref\|YP_002809432.1\| putative trp operon repressor [Vibrio cholerae M66-2], gi\|227008769... gi\|121587777, gi... - gi\|121587777\|ref\|ZP_01677537.1\| trp operon repressor, putative [Vibrio cholerae 2740-80], gi\|1215480... gi\|126510732, gi... - gi\|153818710\|ref\|ZP_01971377.1\| trp operon repressor, putative [Vibrio cholerae NCTC 8457], gi\|12651... gi\|254846736, gi... - gi\|254851031\|ref\|ZP_05240381.1\| trp operon repressor [Vibrio cholerae MO10], gi\|254846736\|gb\|EET2515... gi\|153822748, gi... - gi\|153822748\|ref\|ZP_01975415.1\| trp operon repressor, putative [Vibrio cholerae B33], gi\|126519731\|g... gi\|9655142, gi\|1... - gi\|9655142\|gb\|AAF93866.1\| trp operon repressor, putative [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11356017 - gi\|11356017\|pir\|\|G82290 probable trp operon repressor VC0701 [imported] - Vibrio cholerae (strain N1...	117.0	[0..1]	[95..16]
TRPR_HAEIN - Trp operon repressor homolog OS=Haemophilus influenzae GN=trpR PE=3 SV=1 gi\|144983969 - gi\|144983969\|gb\|EDJ91411.1\| Trp operon repressor [Haemophilus influenzae R3021] TRPR_HAEIG - Trp operon repressor homolog OS=Haemophilus influenzae (strain PittGG) GN=trpR PE=3 SV=1 gi\|229844698, gi... - gi\|229844698\|ref\|ZP_04464837.1\| Trp operon repressor [Haemophilus influenzae 6P18H1], gi\|229812412\|g... gi\|229810885, gi... - gi\|229845881\|ref\|ZP_04465993.1\| Trp operon repressor [Haemophilus influenzae 7P49H1], gi\|229810885\|g... gi\|42630342 - gi\|42630342\|ref\|ZP_00155886.1\| COG2973: Trp operon repressor [Haemophilus influenzae R2846] gi\|42631147 - gi\|42631147\|ref\|ZP_00156685.1\| COG2973: Trp operon repressor [Haemophilus influenzae R2866] TRPR_HAEI8 - Trp operon repressor homolog OS=Haemophilus influenzae (strain 86-028NP) GN=trpR PE=3 SV=1 TRPR_HAEIN - Trp operon repressor homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) G... TRPR_HAEIE - Trp operon repressor homolog OS=Haemophilus influenzae (strain PittEE) GN=trpR PE=3 SV=1 gi\|145272697, gi... - gi\|145638368\|ref\|ZP_01793978.1\| Trp operon repressor [Haemophilus influenzae PittII], gi\|145272697\|g... gi\|145634758, gi... - gi\|145634758\|ref\|ZP_01790466.1\| Trp operon repressor [Haemophilus influenzae PittAA], gi\|145267924\|g... gi\|145630579 - gi\|145630579\|ref\|ZP_01786359.1\| Trp operon repressor [Haemophilus influenzae 22.4-21] gi\|145628272, gi... - gi\|145628272\|ref\|ZP_01784073.1\| Trp operon repressor [Haemophilus influenzae 22.1-21], gi\|144980047\|...	117.0	[0..1]	[101..1]
TRPR_CHLCV - Trp operon repressor homolog OS=Chlamydophila caviae GN=trpR PE=3 SV=1 TRPR_CHLCV - Trp operon repressor homolog OS=Chlamydophila caviae (strain GPIC) GN=trpR PE=3 SV=1	116.0	[0..1]	[97..1]
gi\|229512410, gi... - gi\|229512410\|ref\|ZP_04401884.1\| hypothetical protein VCB_000050 [Vibrio cholerae TMA 21], gi\|2293505... gi\|75815405 - gi\|75815405\|ref\|ZP_00745916.1\| COG2973: Trp operon repressor [Vibrio cholerae V52] gi\|75826059 - gi\|75826059\|ref\|ZP_00755494.1\| COG2973: Trp operon repressor [Vibrio cholerae O395] gi\|229519972, gi... - gi\|229519972\|ref\|ZP_04409402.1\| hypothetical protein VIF_000488 [Vibrio cholerae TM 11079-80], gi\|22...	114.0	[0..1]	[95..1]
TRPR_ACTSZ - Trp operon repressor homolog OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=trpR PE=3 ...	113.0	[0..1]	[100..1]
gi\|75819391, gi\|... - gi\|75819391\|ref\|ZP_00749473.1\| COG2973: Trp operon repressor [Vibrio cholerae V51], gi\|116220078\|ref... gi\|229505680, gi... - gi\|229505680\|ref\|ZP_04395190.1\| hypothetical protein VCF_000891 [Vibrio cholerae BX 330286], gi\|2293... gi\|229354270, gi... - gi\|229508746\|ref\|ZP_04398239.1\| hypothetical protein VCE_000151 [Vibrio cholerae B33], gi\|229354270\|... gi\|75829553, gi\|... - gi\|75829553\|ref\|ZP_00758852.1\| COG2973: Trp operon repressor [Vibrio cholerae MO10], gi\|116188427\|re... gi\|229344193, gi... - gi\|229519504\|ref\|ZP_04408947.1\| hypothetical protein VCC_003534 [Vibrio cholerae RC9], gi\|229344193\|... gi\|229608699, gi... - gi\|229608699\|ref\|YP_002879347.1\| hypothetical protein VCD_003621 [Vibrio cholerae MJ-1236], gi\|22937... TRPR_VIBCH - Trp operon repressor homolog OS=Vibrio cholerae GN=trpR PE=3 SV=2 TRPR_VIBCH - Trp operon repressor homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961...	112.0	[0..1]	[95..1]
gi\|58426471 - gi\|58426471\|gb\|AAW75508.1\| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331]	112.0	[0..5]	[94..79]
gi\|78035859, gi\|... - gi\|78047429\|ref\|YP_363604.1\| hypothetical protein XCV1873 [Xanthomonas campestris pv. vesicatoria st...	110.0	[0..5]	[94..8]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLSRNLEQW HAFVEMLRTA FAQGKEQEIL TLLLTPDERD SVGLRLQIVA QLLDKSVPQR  60
   61 EIQQNLNTSA ATITRGSNMI KTMPPEFMAW VKEQLDEQAK KD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.045757
Match:	1rcsA
Description:	Trp repressor, TrpR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits