YRC Public Data Repository - Protein Structure Prediction

Protein:	TOP3_ECOLI
Organism:	Escherichia coli
Length:	653 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TOP3_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110805430, gi... - gi\|110805430\|ref\|YP_688950.1\| DNA topoisomerase III [Shigella flexneri 5 str. 8401], gi\|110614978\|gb... gi\|24112840, gi\|... - ref\|NP_707350.1\| DNA topoisomerase III [Shigella flexneri 2a str. 301], gb\|AAN43057.1\| DNA topoisom...	713.0	[0..1]	[653..20]
gi\|75177309, gi\|... - gi\|75177309\|ref\|ZP_00697398.1\| COG0550: Topoisomerase IA [Shigella boydii BS512], gi\|187731958\|ref\|Y...	713.0	[0..1]	[653..1]
gi\|192926546, gi... - gi\|75256163\|ref\|ZP_00727859.1\| COG0550: Topoisomerase IA [Escherichia coli E22], gi\|193065774\|ref\|ZP... gi\|191169041, gi... - gi\|75227680\|ref\|ZP_00714419.1\| COG0550: Topoisomerase IA [Escherichia coli B7A], gi\|191169041\|ref\|ZP... gi\|75210248, gi\|... - gi\|75210248\|ref\|ZP_00710416.1\| COG0550: Topoisomerase IA [Escherichia coli B171], gi\|194428532\|ref\|Z... gi\|157079934, gi... - gi\|75190794\|ref\|ZP_00704061.1\| COG0550: Topoisomerase IA [Escherichia coli E24377A], gi\|157157904\|re... gi\|209919125, gi... - gi\|209919125\|ref\|YP_002293209.1\| DNA topoisomerase III [Escherichia coli SE11], gi\|209912384\|dbj\|BAG... gi\|218554329, gi... - gi\|218554329\|ref\|YP_002387242.1\| DNA topoisomerase III [Escherichia coli IAI1], gi\|218361097\|emb\|CAQ...	713.0	[0..1]	[653..1]
gi\|81245243, gi\|... - gi\|82543832\|ref\|YP_407779.1\| DNA topoisomerase III [Shigella boydii Sb227], gi\|81245243\|gb\|ABB65951....	712.0	[0..1]	[653..1]
gi\|56479904, gi\|... - gi\|56479904\|ref\|NP_707350.2\| DNA topoisomerase III [Shigella flexneri 2a str. 301], gi\|56383455\|gb\|A... gi\|30041223, gi\|... - gi\|30062974\|ref\|NP_837145.1\| DNA topoisomerase III [Shigella flexneri 2a str. 2457T], gi\|30041223\|gb...	711.0	[0..1]	[653..1]
gi\|192957672, gi... - gi\|75236770\|ref\|ZP_00720841.1\| COG0550: Topoisomerase IA [Escherichia coli E110019], gi\|193068877\|re...	711.0	[0..1]	[653..1]
gi\|194418261, gi... - gi\|83569630\|ref\|ZP_00921081.1\| COG0550: Topoisomerase IA [Shigella dysenteriae 1012], gi\|194433498\|r...	711.0	[0..1]	[653..1]
gi\|14719499 - gi\|14719499\|pdb\|1I7D\|A Chain A, Noncovalent Complex Of E.Coli Dna Topoisomerase Iii With An 8-Base S...	710.0	[0..1]	[653..1]
gi\|209159950, gi... - gi\|209398550\|ref\|YP_002270834.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|208816995, gi... - gi\|208816995\|ref\|ZP_03258115.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|25292779, gi\|... - pir\|\|A85786 DNA topoisomerase III [imported] - Escherichia coli (strain O157:H7, substrain EDL933),... gi\|208810499, gi... - gi\|208810499\|ref\|ZP_03252375.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|195937449 - gi\|195937449\|ref\|ZP_03082831.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4024] gi\|15802174, gi\|... - gi\|15802174\|ref\|NP_288196.1\| DNA topoisomerase III [Escherichia coli O157:H7 EDL933], gi\|12515788\|gb... gi\|15831723, gi\|... - gi\|15831723\|ref\|NP_310496.1\| DNA topoisomerase III [Escherichia coli O157:H7], gi\|13361936\|dbj\|BAB35... gi\|217318304, gi... - gi\|217328957\|ref\|ZP_03445038.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|168770726, gi... - gi\|189360381\|gb\|EDU78800.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4486], gi\|1687707... gi\|189367462, gi... - gi\|189367462\|gb\|EDU85878.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4501], gi\|1687621... gi\|189356198, gi... - gi\|189356198\|gb\|EDU74617.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4401], gi\|1687567... gi\|254592781, gi... - gi\|254793381\|ref\|YP_003078218.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|168749416, gi... - gi\|188016281\|gb\|EDU54403.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4113], gi\|1687494... gi\|168800050, gi... - gi\|189377609\|gb\|EDU96025.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC508], gi\|16880005... gi\|168788166, gi... - gi\|189372062\|gb\|EDU90478.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC869], gi\|16878816... gi\|189000366, gi... - gi\|189000366\|gb\|EDU69352.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4076], gi\|1687821... gi\|168774931, gi... - gi\|187769445\|gb\|EDU33289.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. EC4196], gi\|1687749... gi\|15831723, gi\|... - gi\|15831723\|ref\|NP_310496.1\| DNA topoisomerase III [Escherichia coli O157:H7 str. Sakai], gi\|1336193...	710.0	[0..1]	[653..1]
gi\|73855396, gi\|... - gi\|74311919\|ref\|YP_310338.1\| DNA topoisomerase III [Shigella sonnei Ss046], gi\|73855396\|gb\|AAZ88103....	709.0	[0..1]	[653..1]

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Predicted Domain #1

Region A:
Residues: [1-653]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFIAEKPS LARAIADVLP KPHRKGDGFI ECGNGQVVTW CIGHLLEQAQ PDAYDSRYAR  60
   61 WNLADLPIVP EKWQLQPRPS VTKQLNVIKR FLHEASEIVH AGDPDREGQL LVDEVLDYLQ 120
  121 LAPEKRQQVQ RCLINDLNPQ AVERAIDRLR SNSEFVPLCV SALARARADW LYGINMTRAY 180
  181 TILGRNAGYQ GVLSVGRVQT PVLGLVVRRD EEIENFVAKD FFEVKAHIVT PADERFTAIW 240
  241 QPSEACEPYQ DEEGRLLHRP LAEHVVNRIS GQPAIVTSYN DKRESESAPL PFSLSALQIE 300
  301 AAKRFGLSAQ NVLDICQKLY ETHKLITYPR SDCRYLPEEH FAGRHAVMNA ISVHAPDLLP 360
  361 QPVVDPDIRN RCWDDKKVDA HHAIIPTARS SAINLTENEA KVYNLIARQY LMQFCPDAVF 420
  421 RKCVIELDIA KGKFVAKARF LAEAGWRTLL GSKERDEEND GTPLPVVAKG DELLCEKGEV 480
  481 VERQTQPPRH FTDATLLSAM TGIARFVQDK DLKKILRATD GLGTEATRAG IIELLFKRGF 540
  541 LTKKGRYIHS TDAGKALFHS LPEMATRPDM TAHWESVLTQ ISEKQCRYQD FMQPLVGTLY 600
  601 QLIDQAKRTP VRQFRGIVAP GSGGSADKKK AAPRKRSAKK SPPADEVGSG AIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2o19A
Description:	No description for 2o19A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits