YRC Public Data Repository - Protein Structure Prediction

Protein:	TOLA_ECOLI
Organism:	Escherichia coli
Length:	421 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TOLA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|7549210 - gi\|7549210\|gb\|AAF63787.1\|AF142406_1 200 kDa antigen p200 [Babesia bigemina]	163.0	[0..31]	[411..228]
gi\|62360137, gi\|... - gi\|70801193\|gb\|AAZ11101.1\| hypothetical protein, conserved [Trypanosoma brucei], gi\|62360137\|gb\|AAX8... gi\|71753647, gi\|... - gi\|72388472\|ref\|XP_844660.1\| hypothetical protein [Trypanosoma brucei TREU927], gi\|71753647\|ref\|XP_8...	158.0	[0..30]	[414..481]
gi\|70870608 - gi\|70870608\|gb\|EAN84917.1\| kinetoplast DNA-associated protein, putative [Trypanosoma cruzi] gi\|71408769 - gi\|71408769\|ref\|XP_806768.1\| kinetoplast DNA-associated protein [Trypanosoma cruzi strain CL Brener]	152.0	[0..31]	[394..316]
gi\|118352773 - gi\|118352773\|ref\|XP_001009657.1\| hypothetical protein TTHERM_00155290 [Tetrahymena thermophila] gi\|118352773, gi... - gi\|89291424\|gb\|EAR89412.1\| hypothetical protein TTHERM_00155290 [Tetrahymena thermophila SB210], gi\|...	151.0	[0..29]	[413..587]
gi\|70799929, gi\|... - gi\|73544167\|ref\|XP_847978.1\| kinetoplast-associated protein-like protein [Leishmania major strain Fr...	150.0	[0..27]	[412..167]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	145.0	[0..12]	[389..1840]
gi\|68129234 - gi\|68129234\|emb\|CAJ07774.1\| hypothetical protein, conserved [Leishmania major] gi\|157875544 - gi\|157875544\|ref\|XP_001686160.1\| hypothetical protein [Leishmania major strain Friedlin]	141.0	[0..1]	[400..904]

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Predicted Domain #1

Region A:
Residues: [1-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKATEQNDK LKRAIIISAV LHVILFAALI WSSFDENIEA SAGGGGGSSI DAVMVDSGAV  60
   61 VEQYKRMQSQ ESSAKRSDEQ RKMKEQQAAE ELREKQAAEQ ERLKQLEKER LAAQEQKKQA 120
  121 EEAAKQAELK QKQAEEAAAK AAADAKAKAE ADAKAAEEAA KKAAADAKKK AEAEAAKAAA 180
  181 EAQKKAEAAA AALKKKAEAA EAAAAEARKK AATEAAEKAK AEAEKKAAAE KAAADKKAAA 240
  241 EKAAADKKAA EKAAAEKAAA DKKAAAEKAA ADKKAAAAKA AAEKAAAAKA AAEADDIFGE 300
  301 LSSGKNAPKT GGGAKGNNAS PAGSGNTKNN GASGADINNY AGQIKSAIES KFY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.39794
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [354-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DASSYAGKTC TLRIKLAPDG MLLDIKPEGG DPALCQAALA AAKLAKIPKP PSQAVYEVFK  60
   61 NAPLDFKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1tolA
Description:	N-terminal domains of the minor coat protein g3p; TolA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits