YRC Public Data Repository - Protein Structure Prediction

Protein:	TDCA_ECOLI
Organism:	Escherichia coli
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDCA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91191158, gi\|... - gi\|91224247\|ref\|ZP_01259510.1\| putative transcription regulator protein [Vibrio alginolyticus 12G01]...	264.0	[0..6]	[306..1]
gi\|116185384, gi... - gi\|75856032\|ref\|ZP_00763668.1\| COG0583: Transcriptional regulator [Vibrio sp. Ex25], gi\|254227935\|re...	262.0	[0..6]	[306..1]
gi\|28900071, gi\|... - gi\|28900071\|ref\|NP_799726.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD ... gi\|28808354 - gi\|28808354\|dbj\|BAC61559.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD 2...	262.0	[0..6]	[306..1]
gi\|27367995, gi\|... - gi\|27367995\|ref\|NP_763522.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359568\|gb\|AAO...	256.0	[0..5]	[309..1]
gi\|37200667, gi\|... - gi\|37676126\|ref\|NP_936522.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200667\|dbj\|BA...	255.0	[0..5]	[309..1]
gi\|114045851, gi... - gi\|78689367\|ref\|ZP_00854030.1\| transcriptional regulator, LysR family [Shewanella sp. MR-7], gi\|7851...	254.0	[0..6]	[300..1]
gi\|228901018, gi... - gi\|228901018\|ref\|ZP_04065229.1\| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222], g... gi\|218541706, gi... - gi\|218897372\|ref\|YP_002445783.1\| transcriptional regulator, LysR family [Bacillus cereus G9842], gi\|... gi\|228965395, gi... - gi\|228965395\|ref\|ZP_04126485.1\| Transcriptional regulator, LysR [Bacillus thuringiensis serovar sott... gi\|74491626, gi\|... - gi\|75760891\|ref\|ZP_00740903.1\| Transcriptional regulators, LysR family [Bacillus thuringiensis serov...	253.0	[0..4]	[295..1]
gi\|49329257, gi\|... - gi\|49477701\|ref\|YP_036558.1\| LysR family transcriptional regulator [Bacillus thuringiensis serovar k...	253.0	[0..4]	[295..1]
gi\|117614564, gi... - gi\|78685922\|ref\|ZP_00850696.1\| transcriptional regulator, LysR family [Shewanella sp. ANA-3], gi\|785...	252.0	[0..6]	[300..1]
gi\|227003114, gi... - gi\|227814751\|ref\|YP_002814760.1\| transcriptional regulator, LysR family [Bacillus anthracis str. CDC... gi\|190563361, gi... - gi\|190565334\|ref\|ZP_03018254.1\| transcriptional regulator, LysR family [Bacillus anthracis Tsiankovs... gi\|177649258, gi... - gi\|177649258\|ref\|ZP_02932260.1\| transcriptional regulator, LysR family [Bacillus anthracis str. A017... gi\|170130499, gi... - gi\|170704698\|ref\|ZP_02895164.1\| transcriptional regulator, LysR family [Bacillus anthracis str. A038... gi\|170686946, gi... - gi\|170686946\|ref\|ZP_02878165.1\| transcriptional regulator, LysR family [Bacillus anthracis str. A046... gi\|254751779 - gi\|254751779\|ref\|ZP_05203816.1\| transcriptional regulator, LysR family protein [Bacillus anthracis s... gi\|167641359, gi... - gi\|167641359\|ref\|ZP_02399610.1\| transcriptional regulator, LysR family [Bacillus anthracis str. A019... gi\|254722422 - gi\|254722422\|ref\|ZP_05184210.1\| transcriptional regulator, LysR family protein [Bacillus anthracis s... gi\|164715016, gi... - gi\|165868290\|ref\|ZP_02212950.1\| transcriptional regulator, LysR family [Bacillus anthracis str. A048... gi\|254685016 - gi\|254685016\|ref\|ZP_05148876.1\| transcriptional regulator, LysR family protein [Bacillus anthracis s... gi\|229269099, gi... - gi\|229604691\|ref\|YP_002866766.1\| transcriptional regulator, LysR family [Bacillus anthracis str. A02... gi\|254760297 - gi\|254760297\|ref\|ZP_05212321.1\| transcriptional regulator, LysR family protein [Bacillus anthracis s... gi\|49179207, gi\|... - gi\|49185280\|ref\|YP_028532.1\| LysR family transcriptional regulator [Bacillus anthracis str. Sterne],... gi\|47527731, gi\|... - gi\|47527731\|ref\|YP_019080.1\| LysR family transcriptional regulator [Bacillus anthracis str. 'Ames An... gi\|30262438, gi\|... - gi\|30262438\|ref\|NP_844815.1\| LysR family transcriptional regulator [Bacillus anthracis str. Ames], g...	252.0	[0..4]	[295..1]

Back

Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTILLPKTQ HLVVFQEVIR SGSIGSAAKE LGLTQPAVSK IINDIEDYFG VELVVRKNTG  60
   61 VTLTPAGQLL LSRSESITRE MKNMVNEISG MSSEAVVEVS FGFPSLIGFT FMSGMINKFK 120
  121 EVFPKAQVSM YEAQLSSFLP AIRDGRLDFA IGTLSAEMKL QDLHVEPLFE SEFVLVASKS 180
  181 RTCTGTTTLE SLKNEQWVLP QTNMGYYSEL LTTLQRNGIS IENIVKTDSV VTIYNLVLNA 240
  241 DFLTVIPCDM TSPFGSNQFI TIPVEETLPV AQYAAVWSKN YRIKKAASVL VELAKEYSSY 300
  301 NGCRRRQLIE VG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.154902
Match:	2h99A
Description:	No description for 2h99A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits