YRC Public Data Repository - Protein Structure Prediction

Protein:	TATA_ECOLI
Organism:	Escherichia coli
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TATA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|73857826, gi\|... - gi\|74314349\|ref\|YP_312768.1\| twin argininte translocase protein A [Shigella sonnei Ss046], gi\|738578...	92.0	[0..1]	[89..15]
gi\|124896048, gi... - gi\|84360597\|ref\|ZP_00985295.1\| COG1826: Sec-independent protein secretion pathway components [Burkho...	92.0	[0..1]	[87..1]
gi\|2367310, gi\|4... - gi\|49176427\|ref\|NP_418280.3\| twin argininte translocase protein A [Escherichia coli K12], gb\|AAC7683... gi\|81243131, gi\|... - gi\|82778983\|ref\|YP_405332.1\| twin argininte translocase protein A [Shigella dysenteriae Sd197], gi\|8... gi\|26250604, gi\|... - gi\|26250604\|ref\|NP_756644.1\| twin argininte translocase protein A [Escherichia coli CFT073], gi\|2611... gi\|81247600, gi\|... - gi\|82546189\|ref\|YP_410136.1\| twin argininte translocase protein A [Shigella boydii Sb227], gi\|812476... gi\|30043127, gi\|... - gi\|30064867\|ref\|NP_839038.1\| twin argininte translocase protein A [Shigella flexneri 2a str. 2457T],... gi\|110617020, gi... - gi\|110807472\|ref\|YP_690992.1\| twin argininte translocase protein A [Shigella flexneri 5 str. 8401], ... gi\|115515240, gi... - gi\|117626116\|ref\|YP_859439.1\| twin argininte translocase protein A [Escherichia coli APEC O1], gi\|11... gi\|3193217, gi\|2... - gi\|7444818\|pir\|\|E65188 hypothetical 11.3 kD protein in udp-rfaH intergenic region - Escherichia coli... gi\|24054404, gi\|... - gi\|24115132\|ref\|NP_709642.1\| twin argininte translocase protein A [Shigella flexneri 2a str. 301], g... gi\|237702871, gi... - gi\|237702871\|ref\|ZP_04533352.1\| twin argininte translocase A [Escherichia sp. 3_2_53FAA], gi\|2269030...	92.0	[0..1]	[89..15]
gi\|170135587, gi... - gi\|170699500\|ref\|ZP_02890542.1\| twin-arginine translocation protein, TatB subunit [Burkholderia ambi... TATB_BURCM - Sec-independent protein translocase protein TatB OS=Burkholderia ambifaria (strain ATCC BAA-244 / AM...	92.0	[0..1]	[87..1]
gi\|25302684 - gi\|25302684\|pir\|\|D86071 hypothetical protein tatA [imported] - Escherichia coli (strain O157:H7, su... gi\|15804428, gi\|... - gi\|15804428\|ref\|NP_290468.1\| twin argininte translocase protein A [Escherichia coli O157:H7 EDL933],...	92.0	[0..1]	[89..15]
TATB_BURXL - Sec-independent protein translocase protein TatB OS=Burkholderia xenovorans (strain LB400) GN=tatB P...	91.0	[0..1]	[87..1]
TATB_BURCH - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain HI2424) GN=tatB... TATB_BURCA - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain AU 1054) GN=tat... gi\|124871292, gi... - gi\|254246516\|ref\|ZP_04939837.1\| Twin-arginine translocation protein TatB [Burkholderia cenocepacia P... gi\|169815013, gi... - gi\|170731771\|ref\|YP_001763718.1\| sec-independent translocase [Burkholderia cenocepacia MC0-3], gi\|16...	91.0	[0..1]	[87..1]
TATB_BURL3 - Sec-independent protein translocase protein TatB OS=Burkholderia lata (strain ATCC 17760 / LMG 22485... TATB_BURS3 - Sec-independent protein translocase protein TatB OS=Burkholderia sp. (strain 383) GN=tatB PE=3 SV=1	91.0	[0..1]	[87..1]
gi\|67533054, gi\|... - gi\|67545725\|ref\|ZP_00423645.1\| Twin-arginine translocation protein TatB [Burkholderia vietnamiensis ...	91.0	[0..1]	[87..1]
gi\|91213385, gi\|... - gi\|91213385\|ref\|YP_543371.1\| twin argininte translocase protein A [Escherichia coli UTI89], gi\|91074...	91.0	[0..1]	[89..15]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGISIWQLL IIAVIVVLLF GTKKLGSIGS DLGASIKGFK KAMSDDEPKQ DKTSQDADFT  60
   61 AKTIADKQAD TNQEQAKTED AKRHDKEQV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	12.769551
Match:	PF02416.7
Description:	No description for PF02416.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits