YRC Public Data Repository - Protein Structure Prediction

Protein:	TAG1_ECOLI, YMGE...
Organism:	Escherichia coli
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAG1_ECOLI, YMGE....

Description	E-value	Query Range	Subject Range
gi\|76809430, gi\|... - gi\|76809430\|ref\|YP_334412.1\| hypothetical protein BURPS1710b_3035 [Burkholderia pseudomallei 1710b],...	86.0	[0..2]	[83..244]
gi\|78390589, gi\|... - gi\|78492161\|ref\|ZP_00844398.1\| Transglycosylase-associated protein [Rhodopseudomonas palustris BisB1...	85.0	[0..1]	[84..46]
gi\|67544650, gi\|... - gi\|67544650\|ref\|ZP_00422577.1\| Transglycosylase-associated protein [Burkholderia vietnamiensis G4], ...	78.0	[0..3]	[84..45]
gi\|111280999, gi... - gi\|111618532\|ref\|ZP_01405554.1\| membrane protein-like [Acidovorax avenae subsp. citrulli AAC00-1], g...	78.0	[0..17]	[84..119]
gi\|115367309, gi... - gi\|115375661\|ref\|ZP_01462916.1\| hypothetical protein STIAU_2531 [Stigmatella aurantiaca DW4/3-1], gi...	74.0	[0..2]	[84..47]
gi\|114326808, gi... - gi\|114326808\|ref\|YP_743965.1\| integral membrane protein [Granulibacter bethesdensis CGDNIH1], gi\|114...	74.0	[0..2]	[84..20]
gi\|110805195, gi... - gi\|110805195\|ref\|YP_688715.1\| hypothetical protein SFV_1203 [Shigella flexneri 5 str. 8401], gi\|1106...	73.0	[0..1]	[83..12]
gi\|145224452, gi... - gi\|89341093\|ref\|ZP_01193338.1\| membrane protein-like [Mycobacterium flavescens PYR-GCK], gi\|89318724...	72.0	[0..3]	[67..135]
gi\|56127540, gi\|... - gi\|56413283\|ref\|YP_150358.1\| hypothetical protein SPA1076 [Salmonella enterica subsp. enterica serov... gi\|214002627 - gi\|214002627\|ref\|ZP_03413362.1\| hypothetical protein Salmonellentericaenterica_20729 [Salmonella ent... gi\|213622056 - gi\|213622056\|ref\|ZP_03374839.1\| hypothetical protein SentesTyp_32841 [Salmonella enterica subsp. ent... gi\|213426627 - gi\|213426627\|ref\|ZP_03359377.1\| hypothetical protein SentesTyphi_14048 [Salmonella enterica subsp. e... gi\|213851846 - gi\|213851846\|ref\|ZP_03381378.1\| hypothetical protein SentesT_02485 [Salmonella enterica subsp. enter... gi\|213647888 - gi\|213647888\|ref\|ZP_03377941.1\| hypothetical protein SentesTy_11734 [Salmonella enterica subsp. ente... gi\|197362208, gi... - gi\|197362208\|ref\|YP_002141845.1\| hypothetical protein SSPA1004 [Salmonella enterica subsp. enterica ... gi\|197213967, gi... - gi\|197250264\|ref\|YP_002146226.1\| transglycosylase associated protein [Salmonella enterica subsp. ent... gi\|213162927 - gi\|213162927\|ref\|ZP_03348637.1\| hypothetical protein Salmoneentericaenterica_24041 [Salmonella enter... gi\|200390187, gi... - gi\|200390187\|ref\|ZP_03216798.1\| transglycosylase-associated protein [Salmonella enterica subsp. ente... gi\|205342745, gi... - gi\|205342745\|gb\|EDZ29509.1\| transglycosylase-associated protein [Salmonella enterica subsp. enterica... gi\|205339437, gi... - gi\|205339437\|gb\|EDZ26201.1\| transglycosylase-associated protein [Salmonella enterica subsp. enterica... gi\|194470750, gi... - gi\|194470750\|ref\|ZP_03076734.1\| transglycosylase-associated protein [Salmonella enterica subsp. ente... gi\|194408694, gi... - gi\|194450390\|ref\|YP_002045843.1\| transglycosylase-associated protein [Salmonella enterica subsp. ent... gi\|29141555, gi\|... - gi\|29141555\|ref\|NP_804897.1\| hypothetical protein t1080 [Salmonella enterica subsp. enterica serovar... gi\|238912138 - gi\|238912138\|ref\|ZP_04655975.1\| hypothetical protein SentesTe_13541 [Salmonella enterica subsp. ente... gi\|16760687 - gi\|16760687\|ref\|NP_456304.1\| hypothetical protein STY1925 [Salmonella enterica subsp. enterica serov... gi\|25319827, gi\|... - gi\|25319827\|pir\|\|AF0722 probable membrane protein STY1925 [imported] - Salmonella enterica subsp. en... gi\|168233840, gi... - gi\|205332141\|gb\|EDZ18905.1\| transglycosylase-associated protein [Salmonella enterica subsp. enterica... gi\|16765138, gi\|... - gi\|16765138\|ref\|NP_460753.1\| putative transglycosylase-associated protein [Salmonella typhimurium LT... gi\|167993246, gi... - gi\|205328692\|gb\|EDZ15456.1\| transglycosylase-associated protein [Salmonella enterica subsp. enterica... lcl\|NC_016856.1_... - [gene=ymgE] [protein=putative transglycosylase-associated protein] [protein_id=YP_005237732.1] [loca...	72.0	[0..1]	[83..1]
gi\|91210409, gi\|... - gi\|91210409\|ref\|YP_540395.1\| transglycosylase associated protein [Escherichia coli UTI89], gi\|910719... gi\|226899908, gi... - gi\|237705151\|ref\|ZP_04535632.1\| transglycosylase associated protein [Escherichia sp. 3_2_53FAA], gi\|... gi\|26247510, gi\|... - gi\|26247510\|ref\|NP_753550.1\| transglycosylase associated protein [Escherichia coli CFT073], gi\|26107...	71.0	[0..1]	[83..12]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIIAWIIFD LIAGIIAKLI MPGRDGGGFF LTCILGIVGA VVGGWLATMF GIGGSISGFN  60
   61 LHSFLVAVVG AILVLGIFRL LRRE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.39794
Match:	PF04226.4
Description:	No description for PF04226.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.929	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits