YRC Public Data Repository - Protein Structure Prediction

Protein:	SYP_ECOLI
Organism:	Escherichia coli
Length:	572 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26106541, gi\|... - gi\|26246144\|ref\|NP_752183.1\| prolyl-tRNA synthetase [Escherichia coli CFT073], gi\|26106541\|gb\|AAN787... gi\|91070839, gi\|... - gi\|91209265\|ref\|YP_539251.1\| prolyl-tRNA synthetase [Escherichia coli UTI89], gi\|91070839\|gb\|ABE0572... gi\|226902266, gi... - gi\|237704354\|ref\|ZP_04534835.1\| prolyl-tRNA synthetase [Escherichia sp. 3_2_53FAA], gi\|226902266\|gb\|...	538.0	[0..1]	[572..19]
SYP_ECOK1 - Proline--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=proS PE=3 SV=1 SYP_ECOSM - Proline--tRNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=proS PE=3 SV=1 SYP_ECO27 - Proline--tRNA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proS PE=3 SV=1 SYP_ECOL6 - Proline--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=proS PE=3 SV=... SYP_ECO45 - Proline--tRNA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=proS PE=3 SV=1 SYP_ECO81 - Proline--tRNA ligase OS=Escherichia coli O81 (strain ED1a) GN=proS PE=3 SV=1 sp\|B7UJ96\|SYP_ECO27 - Prolyl-tRNA synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proS PE=3 SV=1 SYP_ECOUT - Proline--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=proS PE=3 SV=2 SYP_ECOL5 - Proline--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=proS PE=3 SV=1 SYP_ECOL6 - Proline--tRNA ligase OS=Escherichia coli O6 GN=proS PE=3 SV=2 gi\|227884892, gi... - gi\|227884892\|ref\|ZP_04002697.1\| proline--tRNA ligase [Escherichia coli 83972], gi\|227838141\|gb\|EEJ48... gi\|190908349, gi... - gi\|75241739\|ref\|ZP_00725576.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli F11], gi\|191171415\|...	537.0	[0..1]	[572..1]
SYP_ECO24 - Proline--tRNA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=proS PE=3 SV=1	537.0	[0..1]	[572..1]
gi\|189364925, gi... - gi\|189364925\|gb\|EDU83341.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501], gi\|168765... gi\|13359652, gi\|... - gi\|15829450\|ref\|NP_308223.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai], gi\|133596... gi\|188013912, gi... - gi\|188013912\|gb\|EDU52034.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113], gi\|168752... gi\|25293208, gi\|... - pir\|\|D85504 proline tRNA synthetase [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|189371068, gi... - gi\|189371068\|gb\|EDU89484.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869], gi\|1687893... gi\|168782925, gi... - gi\|188999651\|gb\|EDU68637.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076], gi\|168782... gi\|12512925, gi\|... - gi\|15799876\|ref\|NP_285888.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 EDL933], gi\|12512925\|g... gi\|187767123, gi... - gi\|187767123\|gb\|EDU30967.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196], gi\|168777... SYP_ECO57 - Proline--tRNA ligase OS=Escherichia coli O157:H7 GN=proS PE=3 SV=1 gi\|189361055, gi... - gi\|189361055\|gb\|EDU79474.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486], gi\|168769... gi\|208812619, gi... - gi\|208812619\|ref\|ZP_03253948.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208729249, gi... - gi\|208809448\|ref\|ZP_03251785.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|195939891 - gi\|195939891\|ref\|ZP_03085273.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi\|168802460, gi... - gi\|189375548\|gb\|EDU93964.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508], gi\|1688024... gi\|254590727, gi... - gi\|254791327\|ref\|YP_003076164.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|217320535, gi... - gi\|217324314\|ref\|ZP_03440398.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588], gi\|2... SYP_ECO5E - Proline--tRNA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=proS PE=3 SV=1 gi\|208741291, gi... - gi\|208821168\|ref\|ZP_03261488.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042], gi\|20...	536.0	[0..1]	[572..1]
gi\|124529581, gi... - gi\|124529581\|ref\|ZP_01700525.1\| prolyl-tRNA synthetase [Escherichia coli B], gi\|124499737\|gb\|EAY4722... gi\|194439920, gi... - gi\|83584732\|ref\|ZP_00923396.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli 101-1], gi\|19443992... SYP_SHIF8 - Proline--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=proS PE=3 SV=2 SYP_ECOSE - Proline--tRNA ligase OS=Escherichia coli (strain SE11) GN=proS PE=3 SV=1 SYP_ECO8A - Proline--tRNA ligase OS=Escherichia coli O8 (strain IAI1) GN=proS PE=3 SV=1 gi\|251783753, gi... - gi\|251783753\|ref\|YP_002998057.1\| hypothetical protein B21_00192 [Escherichia coli BL21], gi\|24237602... gi\|188494186, gi... - gi\|188494186\|ref\|ZP_03001456.1\| prolyl-tRNA synthetase [Escherichia coli 53638], gi\|188489385\|gb\|EDU... gi\|254160314, gi... - gi\|254160314\|ref\|YP_003043422.1\| prolyl-tRNA synthetase [Escherichia coli B str. REL606], gi\|2539722... SYP_SHIFL - Proline--tRNA ligase OS=Shigella flexneri GN=proS PE=3 SV=4 gi\|254287117, gi... - gi\|254287117\|ref\|YP_003052865.1\| prolyl-tRNA synthetase [Escherichia coli BL21(DE3)], gi\|253976424\|g... SYP_ECOLC - Proline--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=proS PE=3 SV=1 gi\|193067639, gi... - gi\|75238899\|ref\|ZP_00722881.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli E110019], gi\|193067... gi\|192931051, gi... - gi\|75258812\|ref\|ZP_00730202.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli E22], gi\|193063143\|... SYP_SHIB3 - Proline--tRNA ligase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=proS PE=3 SV=1 SYP_ECOHS - Proline--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=proS PE=3 SV=1 gi\|56383174, gi\|... - gi\|56479623\|ref\|NP_706140.2\| prolyl-tRNA synthetase [Shigella flexneri 2a str. 301], gi\|56383174\|gb\|... SYP_SHISS - Proline--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=proS PE=3 SV=1 gi\|30039993, gi\|... - gi\|30061751\|ref\|NP_835922.1\| prolyl-tRNA synthetase [Shigella flexneri 2a str. 2457T], gi\|30039993\|g... SYP_SHIBS - Proline--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227) GN=proS PE=3 SV=1	536.0	[0..1]	[572..1]
gi\|194416755, gi... - gi\|83568977\|ref\|ZP_00920441.1\| COG0442: Prolyl-tRNA synthetase [Shigella dysenteriae 1012], gi\|19443...	536.0	[0..1]	[572..1]
SYP_SHIDS - Proline--tRNA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=proS PE=3 SV=1	535.0	[0..1]	[572..1]
gi\|75229820, gi\|... - gi\|75229820\|ref\|ZP_00716347.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli B7A], gi\|191167053\|...	535.0	[0..1]	[572..1]
gi\|194413675, gi... - gi\|75210519\|ref\|ZP_00710670.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli B171], gi\|194428300...	533.0	[0..1]	[572..1]
gi\|16759234 - gi\|16759234\|ref\|NP_454851.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typ... SYP_SALPA - Proline--tRNA ligase OS=Salmonella paratyphi A GN=proS PE=3 SV=1 SYP_SALTI - Prolyl-tRNA synthetase OS=Salmonella typhi GN=proS PE=3 SV=1 SYP_SALTY - Prolyl-tRNA synthetase OS=Salmonella typhimurium GN=proS PE=3 SV=1 SYP_SALPB - Proline--tRNA ligase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=proS PE=3 SV=1 SYP_SALPA - Proline--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=proS PE=3 SV=1 SYP_SALTY - Proline--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=proS PE=3 SV... gi\|29140783, gi\|... - gi\|29140783\|ref\|NP_804125.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typ... SYP_SALTI - Proline--tRNA ligase OS=Salmonella typhi GN=proS PE=3 SV=1 SYP_SALEP - Proline--tRNA ligase OS=Salmonella enteritidis PT4 (strain P125109) GN=proS PE=3 SV=1 SYP_SALG2 - Proline--tRNA ligase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=proS PE=3 SV=1 gi\|213428490 - gi\|213428490\|ref\|ZP_03361240.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|213051828 - gi\|213051828\|ref\|ZP_03344706.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar ... SYP_SALPK - Proline--tRNA ligase OS=Salmonella paratyphi A (strain AKU_12601) GN=proS PE=3 SV=1 gi\|197264294, gi... - gi\|197264294\|ref\|ZP_03164368.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|200386929, gi... - gi\|200386929\|ref\|ZP_03213541.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar ... SYP_SALDC - Proline--tRNA ligase OS=Salmonella dublin (strain CT_02021853) GN=proS PE=3 SV=1 gi\|195632930, gi... - gi\|195632930\|gb\|EDX51384.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newp... gi\|205346928, gi... - gi\|205346928\|gb\|EDZ33559.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Hada... gi\|194459187, gi... - gi\|194472823\|ref\|ZP_03078807.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar ... SYP_SALHS - Proline--tRNA ligase OS=Salmonella heidelberg (strain SL476) GN=proS PE=3 SV=1 gi\|167990131, gi... - gi\|205331403\|gb\|EDZ18167.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar 4,[5... gi\|168245012, gi... - gi\|205336220\|gb\|EDZ22984.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heid... gi\|205335202, gi... - gi\|205335202\|gb\|EDZ21966.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kent... lcl\|NC_016856.1_... - [gene=proS] [protein=prolyl-tRNA synthetase] [protein_id=YP_005235913.1] [location=complement(283167... gi\|213865222 - gi\|213865222\|ref\|ZP_03387341.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar ... SYP_SALPB - Prolyl-tRNA synthetase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=proS PE=3 SV=1 gi\|213580835 - gi\|213580835\|ref\|ZP_03362661.1\| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar ... SYP_SALTY - Proline--tRNA ligase OS=Salmonella typhimurium GN=proS PE=3 SV=1	532.0	[0..1]	[572..1]

Back

Predicted Domain #1

Region A:
Residues: [1-572]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTSQYLLST LKETPADAEV ISHQLMLRAG MIRKLASGLY TWLPTGVRVL KKVENIVREE  60
   61 MNNAGAIEVS MPVVQPADLW QESGRWEQYG PELLRFVDRG ERPFVLGPTH EEVITDLIRN 120
  121 ELSSYKQLPL NFYQIQTKFR DEVRPRFGVM RSREFLMKDA YSFHTSQESL QETYDAMYAA 180
  181 YSKIFSRMGL DFRAVQADTG SIGGSASHEF QVLAQSGEDD VVFSDTSDYA ANIELAEAIA 240
  241 PKEPRAAATQ EMTLVDTPNA KTIAELVEQF NLPIEKTVKT LLVKAVEGSS FPQVALLVRG 300
  301 DHELNEVKAE KLPQVASPLT FATEEEIRAV VKAGPGSLGP VNMPIPVVID RTVAAMSDFA 360
  361 AGANIDGKHY FGINWDRDVA TPEVADIRNV VAGDPSPDGQ GRLLIKRGIE VGHIFQLGTK 420
  421 YSEALKASVQ GEDGRNQILT MGCYGIGVTR VVAAAIEQNY DERGIVWPDA IAPFQVAILP 480
  481 MNMHKSFRVQ ELAEKLYSEL RAQGIEVLLD DRKERPGVMF ADMELIGIPH TIVLGDRNLD 540
  541 NDDIEYKYRR NGEKQLIKTG DIVEYLVKQI KG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	2j3lA
Description:	No description for 2j3lA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits