YRC Public Data Repository - Protein Structure Prediction

Protein:	SURE_ECOLI
Organism:	Escherichia coli
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SURE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26109557, gi\|... - gi\|26249150\|ref\|NP_755190.1\| stationary phase survival protein SurE [Escherichia coli CFT073], gi\|26... gi\|91212112, gi\|... - gi\|91212112\|ref\|YP_542098.1\| stationary phase survival protein SurE [Escherichia coli UTI89], gi\|910...	374.0	[0..1]	[253..16]
gi\|882637\|gb\|AAA... - alternate name ygbC; ORF1 of L07942, has different start due to frameshift in L07942; ORF_f255 gi\|254037786, gi... - gi\|254037786\|ref\|ZP_04871844.1\| stationary phase survival protein SurE [Escherichia sp. 1_1_43], gi\|... gi\|226899667, gi... - gi\|237706627\|ref\|ZP_04537108.1\| stationary phase survival protein SurE [Escherichia sp. 3_2_53FAA], ... gi\|882637 - gi\|882637\|gb\|AAA69254.1\| alternate name ygbC; ORF1 of L07942, has different start due to frameshift ... gi\|194414038, gi... - gi\|194427805\|ref\|ZP_03060351.1\| multifunctional protein SurE [Escherichia coli B171], gi\|194414038\|g... gi\|192927339, gi... - gi\|193065042\|ref\|ZP_03046117.1\| multifunctional protein SurE [Escherichia coli E22], gi\|192927339\|gb... gi\|170681369, gi... - gi\|170681369\|ref\|YP_001744893.1\| multifunctional protein SurE [Escherichia coli SMS-3-5], gi\|1705190...	372.0	[0..1]	[253..3]
gi\|110616173, gi... - gi\|110806625\|ref\|YP_690145.1\| stationary phase survival protein SurE [Shigella flexneri 5 str. 8401]...	371.0	[0..1]	[253..16]
SURE_SHIDS - 5'/3'-nucleotidase SurE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=surE PE=3 SV=1	371.0	[0..1]	[253..1]
SURE_SHIFL - 5'/3'-nucleotidase SurE OS=Shigella flexneri GN=surE PE=3 SV=2 gi\|56383728, gi\|... - gi\|56480177\|ref\|NP_708549.2\| stationary phase survival protein SurE [Shigella flexneri 2a str. 301],... gi\|30064101, gi\|... - gi\|30064101\|ref\|NP_838272.1\| stationary phase survival protein SurE [Shigella flexneri 2a str. 2457T...	365.0	[0..1]	[253..1]
SURE_YERPS - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis GN=surE PE=3 SV=1 SURE_YERP3 - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=surE PE=3 ... SURE_YERPS - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=surE PE=3 SV=1 SURE_YERPY - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=surE PE=3 SV=1 SURE_YERPB - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=surE PE=3 SV=1	363.0	[0..2]	[253..3]
SURE_SALCH - 5'/3'-nucleotidase SurE OS=Salmonella choleraesuis (strain SC-B67) GN=surE PE=3 SV=1 SURE_SALTY - 5'/3'-nucleotidase SurE OS=Salmonella typhimurium GN=surE PE=1 SV=1 gi\|29143183, gi\|... - gi\|29143183\|ref\|NP_806525.1\| stationary phase survival protein SurE [Salmonella enterica subsp. ente... SURE_SALCH - 5'/3'-nucleotidase SurE OS=Salmonella choleraesuis GN=surE PE=3 SV=1 gi\|16761699 - gi\|16761699\|ref\|NP_457316.1\| stationary phase survival protein SurE [Salmonella enterica subsp. ente... SURE_SALTI - 5'/3'-nucleotidase SurE OS=Salmonella typhi GN=surE PE=3 SV=1 SURE_SALTY - 5'/3'-nucleotidase SurE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=surE PE=1... SURE_SALTI - Multifunctional protein surE OS=Salmonella typhi GN=surE PE=3 SV=1 SURE_SALTY - Multifunctional protein surE OS=Salmonella typhimurium GN=surE PE=3 SV=1 gi\|213618985 - gi\|213618985\|ref\|ZP_03372811.1\| stationary phase survival protein SurE [Salmonella enterica subsp. e... gi\|213580996 - gi\|213580996\|ref\|ZP_03362822.1\| stationary phase survival protein SurE [Salmonella enterica subsp. e... gi\|213423437 - gi\|213423437\|ref\|ZP_03356422.1\| stationary phase survival protein SurE [Salmonella enterica subsp. e... gi\|197263312, gi... - gi\|197263312\|ref\|ZP_03163386.1\| 5'/3'-nucleotidase SurE [Salmonella enterica subsp. enterica serovar... SURE_SALSV - 5'/3'-nucleotidase SurE OS=Salmonella schwarzengrund (strain CVM19633) GN=surE PE=3 SV=1 SURE_SALNS - 5'/3'-nucleotidase SurE OS=Salmonella newport (strain SL254) GN=surE PE=3 SV=1 lcl\|NC_016856.1_... - [gene=surE] [protein=stationary phase survival protein SurE] [protein_id=YP_005239039.1] [location=c... gi\|205324860, gi... - gi\|205324860\|gb\|EDZ12699.1\| 5'/3'-nucleotidase SurE [Salmonella enterica subsp. enterica serovar Sai... SURE_SALCH - Multifunctional protein surE OS=Salmonella choleraesuis GN=surE PE=3 SV=1 gi\|213052388 - gi\|213052388\|ref\|ZP_03345266.1\| stationary phase survival protein SurE [Salmonella enterica subsp. e... SURE_SALEP - 5'/3'-nucleotidase SurE OS=Salmonella enteritidis PT4 (strain P125109) GN=surE PE=3 SV=1 SURE_SALG2 - 5'/3'-nucleotidase SurE OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=surE PE=3 SV=1 gi\|200387642, gi... - gi\|200387642\|ref\|ZP_03214254.1\| 5'/3'-nucleotidase SurE [Salmonella enterica subsp. enterica serovar...	361.0	[0..1]	[253..1]
SURE_VIBVU - 5'-nucleotidase SurE OS=Vibrio vulnificus (strain CMCP6) GN=surE PE=3 SV=1 SURE_VIBVU - 5'-nucleotidase surE OS=Vibrio vulnificus GN=surE PE=3 SV=1	360.0	[0..1]	[245..9]
SURE_SALPK - 5'/3'-nucleotidase SurE OS=Salmonella paratyphi A (strain AKU_12601) GN=surE PE=3 SV=1 SURE_SALPA - 5'/3'-nucleotidase SurE OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=surE PE=3 SV=1 SURE_SALPA - 5'/3'-nucleotidase SurE OS=Salmonella paratyphi A GN=surE PE=3 SV=1	360.0	[0..1]	[253..1]
gi\|167052070, gi... - gi\|167399566\|ref\|ZP_02305090.1\| 5'/3'-nucleotidase SurE [Yersinia pestis biovar Antiqua str. UG05-04... gi\|166960462, gi... - gi\|167421543\|ref\|ZP_02313296.1\| 5'/3'-nucleotidase SurE [Yersinia pestis biovar Orientalis str. MG05... gi\|167423217, gi... - gi\|167423217\|ref\|ZP_02314970.1\| 5'/3'-nucleotidase SurE [Yersinia pestis biovar Mediaevalis str. K19... gi\|167469871 - gi\|167469871\|ref\|ZP_02334575.1\| 5'/3'-nucleotidase SurE [Yersinia pestis FV-1] SURE_YERPG - 5'/3'-nucleotidase SurE OS=Yersinia pestis bv. Antiqua (strain Angola) GN=surE PE=3 SV=1 gi\|229687044, gi... - gi\|229899552\|ref\|ZP_04514693.1\| stationary-phase survival protein [Yersinia pestis biovar Orientalis... gi\|229700539, gi... - gi\|229896465\|ref\|ZP_04511633.1\| stationary-phase survival protein [Yersinia pestis Pestoides A], gi\|... gi\|229838985, gi... - gi\|229838985\|ref\|ZP_04459144.1\| stationary-phase survival protein [Yersinia pestis biovar Orientalis... gi\|165922458, gi... - gi\|165925846\|ref\|ZP_02221678.1\| 5'/3'-nucleotidase SurE [Yersinia pestis biovar Orientalis str. F199... gi\|165991028, gi... - gi\|166010121\|ref\|ZP_02231019.1\| 5'/3'-nucleotidase SurE [Yersinia pestis biovar Antiqua str. E197900... gi\|166213016, gi... - gi\|166213016\|ref\|ZP_02239051.1\| 5'/3'-nucleotidase SurE [Yersinia pestis biovar Antiqua str. B420030... gi\|45435042, gi\|... - gi\|45440186\|ref\|NP_991725.1\| stationary phase survival protein SurE [Yersinia pestis biovar Microtus... gi\|21957560, gi\|... - gi\|22124742\|ref\|NP_668165.1\| stationary phase survival protein SurE [Yersinia pestis KIM], gi\|219575... SURE_YERPP - 5'/3'-nucleotidase SurE OS=Yersinia pestis (strain Pestoides F) GN=surE PE=3 SV=1 gi\|16123508, gi\|... - gi\|218930376\|ref\|YP_002348251.1\| stationary phase survival protein SurE [Yersinia pestis CO92], gi\|1... gi\|153997598, gi... - gi\|153997598\|ref\|ZP_02022698.1\| stationary-phase survival protein [Yersinia pestis CA88-4125], gi\|14... SURE_YERPE - 5'/3'-nucleotidase SurE OS=Yersinia pestis GN=surE PE=3 SV=1 gi\|165915335, gi... - gi\|89105877\|ref\|ZP_01178389.1\| COG0496: Predicted acid phosphatase [Yersinia pestis biovar Orientali... SURE_YERPA - 5'/3'-nucleotidase SurE OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=surE PE=3 SV=1 SURE_YERPN - 5'/3'-nucleotidase SurE OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=surE PE=3 SV=1	358.0	[0..2]	[253..3]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILLSNDDG VHAPGIQTLA KALREFADVQ VVAPDRNRSG ASNSLTLESS LRTFTFENGD  60
   61 IAVQMGTPTD CVYLGVNALM RPRPDIVVSG INAGPNLGDD VIYSGTVAAA MEGRHLGFPA 120
  121 LAVSLDGHKH YDTAAAVTCS ILRALCKEPL RTGRILNINV PDLPLDQIKG IRVTRCGTRH 180
  181 PADQVIPQQD PRGNTLYWIG PPGGKCDAGP GTDFAAVDEG YVSITPLHVD LTAHSAQDVV 240
  241 SDWLNSVGVG TQW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.221849
Match:	2phjA
Description:	No description for 2phjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits