YRC Public Data Repository - Protein Structure Prediction

Protein:	SUFD_ECOLI
Organism:	Escherichia coli
Length:	423 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUFD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|108762986, gi... - gi\|108762986\|ref\|YP_629413.1\| cysteine desulfurase activator complex subunit SufB [Myxococcus xanthu...	512.0	[0..9]	[420..33]
gi\|116626727, gi... - gi\|67934184\|ref\|ZP_00527267.1\| FeS assembly protein SufB [Solibacter usitatus Ellin6076], gi\|6785858...	511.0	[0..8]	[420..34]
gi\|22298033, gi\|... - gi\|22298033\|ref\|NP_681280.1\| cysteine desulfurase activator complex subunit SufB [Thermosynechococcu...	511.0	[0..2]	[420..25]
gi\|68523621, gi\|... - gi\|98976244\|gb\|ABF52395.1\| Iron-regulated ABC transporter membrane component SufB [Sphingopyxis alas...	510.0	[0..3]	[420..37]
gi\|7448276 - pir\|\|S76598 hypothetical protein - Synechocystis sp. (strain PCC 6803) Y074_SYNY3 - UPF0051 protein slr0074 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=slr0074 PE=3 SV... Y074_SYNY3 - UPF0051 protein slr0074 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0074 PE=3 SV=1	510.0	[0..8]	[421..32]
gi\|85773781, gi\|... - gi\|86157270\|ref\|YP_464055.1\| cysteine desulfurase activator complex subunit SufB [Anaeromyxobacter d...	510.0	[0..8]	[420..33]
gi\|86608874, gi\|... - gi\|86608874\|ref\|YP_477636.1\| cysteine desulfurase activator complex subunit SufB [Synechococcus sp. ... gi\|86608874, gi\|... - gi\|86608874\|ref\|YP_477636.1\| FeS assembly protein SufB [Cyanobacteria bacterium Yellowstone B-Prime]...	509.0	[0..8]	[420..31]
gi\|115372525, gi... - gi\|115372525\|ref\|ZP_01459833.1\| FeS assembly protein SufB [Stigmatella aurantiaca DW4/3-1], gi\|11537...	509.0	[0..2]	[420..26]
gi\|46118460, gi\|... - gi\|67924846\|ref\|ZP_00518242.1\| FeS assembly protein SufB [Crocosphaera watsonii WH 8501], gi\|6785330...	507.0	[0..8]	[421..32]
gi\|56459265, gi\|... - gi\|56459265\|ref\|YP_154546.1\| cysteine desulfurase activator complex subunit SufB [Idiomarina loihien...	507.0	[0..9]	[420..32]

Back

Predicted Domain #1

Region A:
Residues: [1-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLPNSSNA LQQWHHLFEA EGTKRSPQAQ QHLQQLLRTG LPTRKHENWK YTPLEGLINS  60
   61 QFVSIAGEIS PQQRDALALT LDSVRLVFVD GRYVPALSDA TEGSGYEVSI NDDRQGLPDA 120
  121 IQAEVFLHLT ESLAQSVTHI AVKRGQRPAK PLLLMHITQG VAGEEVNTAH YRHHLDLAEG 180
  181 AEATVIEHFV SLNDARHFTG ARFTINVAAN AHLQHIKLAF ENPLSHHFAH NDLLLAEDAT 240
  241 AFSHSFLLGG AVLRHNTSTQ LNGENSTLRI NSLAMPVKNE VCDTRTWLEH NKGFCNSRQL 300
  301 HKTIVSDKGR AVFNGLINVA QHAIKTDGQM TNNNLLMGKL AEVDTKPQLE IYADDVKCSH 360
  361 GATVGRIDDE QIFYLRSRGI NQQDAQQMII YAFAAELTEA LRDEGLKQQV LARIGQRLPG 420
  421 GAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1vh4A
Description:	Crystal structure of a stabilizer of iron transporter
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.334765053110546	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: