YRC Public Data Repository - Protein Structure Prediction

Protein:	SSUB_ECOLI
Organism:	Escherichia coli
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSUB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	312.0	[0..4]	[255..16]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	311.0	[0..4]	[255..15]
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	309.0	[0..1]	[252..8]
gi\|86356366, gi\|... - gi\|86356366\|ref\|YP_468258.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Rhizobium e...	308.0	[0..4]	[254..15]
gi\|116250536, gi... - gi\|116250536\|ref\|YP_766374.1\| putrescine ABC transporter ATP-binding protein [Rhizobium leguminosaru...	308.0	[0..4]	[254..15]
gi\|226512138, gi... - gi\|254493098\|ref\|ZP_05106269.1\| spermidine/putrescine ABC transporter [Neisseria gonorrhoeae 1291], ... gi\|59717542, gi\|... - gi\|59800647\|ref\|YP_207359.1\| putative ABC transporter, ATP-binding protein, polyamine [Neisseria gon...	308.0	[0..1]	[255..57]
gi\|89349159, gi\|... - gi\|89362113\|ref\|ZP_01199924.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Xanthobact...	306.0	[0..4]	[251..22]
gi\|13475457, gi\|... - gi\|14026209\|dbj\|BAB52807.1\| ABC transporter, polyamine transport protein, ATP-binding protein [Mesor...	305.0	[0..5]	[251..16]
gi\|67665844, gi\|... - gi\|67665844\|ref\|ZP_00463102.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Burkholder... gi\|105894118, gi... - gi\|67658289\|ref\|ZP_00455662.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Burkholder...	304.0	[0..3]	[254..18]
gi\|46143847 - gi\|46143847\|ref\|ZP_00204582.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com... gi\|165875837, gi... - gi\|165975736\|ref\|YP_001651329.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu... gi\|126207768, gi... - gi\|126207768\|ref\|YP_001052993.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu...	304.0	[0..7]	[255..5]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTARLNQGT PLLLNAVSKH YAENIVLNQL DLHIPAGQFV AVVGRSGGGK STLLRLLAGL  60
   61 ETPTAGDVLA GTTPLAEIQE DTRMMFQDAR LLPWKSVIDN VGLGLKGQWR DAARRALAAV 120
  121 GLENRAGEWP AALSGGQKQR VALARALIHR PGLLLLDEPL GALDALTRLE MQDLIVSLWQ 180
  181 EHGFTVLLVT HDVSEAVAMA DRVLLIEEGK IGLDLTVDIP RPRRLGSVRL AELEAEVLQR 240
  241 VMQRGESETR LRKQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits