YRC Public Data Repository - Protein Structure Prediction

Protein:	SOHB_ECOLI
Organism:	Escherichia coli
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SOHB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82776631, gi\|... - gi\|82776631\|ref\|YP_402980.1\| putative periplasmic protease [Shigella dysenteriae Sd197], gi\|81240779...	317.0	[0..1]	[349..1]
gi\|189354830, gi... - gi\|189354830\|gb\|EDU73249.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC440... gi\|189366260, gi... - gi\|189366260\|gb\|EDU84676.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC450... gi\|189359971, gi... - gi\|189359971\|gb\|EDU78390.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC448... gi\|187769295, gi... - gi\|187769295\|gb\|EDU33139.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC419... gi\|188014793, gi... - gi\|188014793\|gb\|EDU52915.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC411... gi\|254592260, gi... - gi\|254792860\|ref\|YP_003077697.1\| predicted inner membrane peptidase [Escherichia coli O157:H7 str. T... gi\|15831098, gi\|... - gi\|15831098\|ref\|NP_309871.1\| putative protease [Escherichia coli O157:H7], gi\|13361309\|dbj\|BAB35267.... gi\|217317556, gi... - gi\|217329117\|ref\|ZP_03445197.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. T... gi\|209771988, gi... - pir\|\|C85760 probable proteinase sohB [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|15801907, gi\|... - gi\|15801907\|ref\|NP_287927.1\| putative periplasmic protease [Escherichia coli O157:H7 EDL933], gi\|125... gi\|15831098, gi\|... - gi\|15831098\|ref\|NP_309871.1\| putative periplasmic protease [Escherichia coli O157:H7 str. Sakai], gi... gi\|208811051, gi... - gi\|208811051\|ref\|ZP_03252884.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. E... gi\|208815761, gi... - gi\|208815761\|ref\|ZP_03256940.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. E... gi\|208739729, gi... - gi\|208819606\|ref\|ZP_03259926.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. E... gi\|209158850, gi... - gi\|209397450\|ref\|YP_002270326.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. ... gi\|188998931, gi... - gi\|188998931\|gb\|EDU67917.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC407... gi\|168790072, gi... - gi\|189370448\|gb\|EDU88864.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC869... gi\|168801619, gi... - gi\|189376289\|gb\|EDU94705.1\| peptidase, S49 (protease IV) family [Escherichia coli O157:H7 str. EC508... gi\|195939206 - gi\|195939206\|ref\|ZP_03084588.1\| putative periplasmic protease [Escherichia coli O157:H7 str. EC4024]	301.0	[0..1]	[349..1]
gi\|227836503, gi... - gi\|227886299\|ref\|ZP_04004104.1\| S49 family SohB endopeptidase [Escherichia coli 83972], gi\|227836503... gi\|26108003, gi\|... - gi\|26247601\|ref\|NP_753641.1\| putative periplasmic protease [Escherichia coli CFT073], gi\|26108003\|gb...	301.0	[0..1]	[349..1]
gi\|226900053, gi... - gi\|237705296\|ref\|ZP_04535777.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218365027, gi... - gi\|218558258\|ref\|YP_002391171.1\| putative periplasmic protease [Escherichia coli S88], gi\|218365027\|... gi\|75242071, gi\|... - gi\|75242071\|ref\|ZP_00725865.1\| COG0616: Periplasmic serine proteases (ClpP class) [Escherichia coli ... gi\|110343096, gi... - gi\|110641504\|ref\|YP_669234.1\| putative periplasmic protease [Escherichia coli 536], gi\|110343096\|gb\|... gi\|91072137, gi\|... - gi\|91210563\|ref\|YP_540549.1\| putative periplasmic protease [Escherichia coli UTI89], gi\|91072137\|gb\|... gi\|117623532, gi... - gi\|117623532\|ref\|YP_852445.1\| putative periplasmic protease [Escherichia coli APEC O1], gi\|115512656...	300.0	[0..1]	[349..1]
gi\|22125947, gi\|... - gi\|22125947\|ref\|NP_669370.1\| putative periplasmic protease [Yersinia pestis KIM], gi\|21958888\|gb\|AAM... gi\|167400849, gi... - gi\|167400849\|ref\|ZP_02306355.1\| peptidase, S49 family [Yersinia pestis biovar Antiqua str. UG05-0454... gi\|25513829 - pir\|\|AB0270 peptidase family U7 protein (EC 3.4.21.-) [imported] - Yersinia pestis (strain CO92) gi\|166962027, gi... - gi\|167420332\|ref\|ZP_02312085.1\| peptidase, S49 family [Yersinia pestis biovar Orientalis str. MG05-1... gi\|51596464, gi\|... - gi\|51596464\|ref\|YP_070655.1\| putative periplasmic protease [Yersinia pseudotuberculosis IP 32953], g... gi\|167056085, gi... - gi\|167424898\|ref\|ZP_02316651.1\| peptidase, S49 family [Yersinia pestis biovar Mediaevalis str. K1973... gi\|45441813, gi\|... - gi\|45441813\|ref\|NP_993352.1\| putative periplasmic protease [Yersinia pestis biovar Microtus str. 910... gi\|169750805, gi... - gi\|170024271\|ref\|YP_001720776.1\| putative periplasmic protease [Yersinia pseudotuberculosis YPIII], ... gi\|149292278, gi... - gi\|149365865\|ref\|ZP_01887900.1\| peptidase family U7 protein [Yersinia pestis CA88-4125], gi\|14929227... gi\|186698539, gi... - gi\|186895513\|ref\|YP_001872625.1\| putative periplasmic protease [Yersinia pseudotuberculosis PB1/+], ... gi\|15980216, gi\|... - gi\|218929312\|ref\|YP_002347187.1\| putative periplasmic protease [Yersinia pestis CO92], gi\|16122444\|r... gi\|165920675, gi... - gi\|165927409\|ref\|ZP_02223241.1\| peptidase, S49 family [Yersinia pestis biovar Orientalis str. F19910... gi\|166010779, gi... - gi\|166010779\|ref\|ZP_02231677.1\| peptidase, S49 family [Yersinia pestis biovar Antiqua str. E1979001]... gi\|229688578, gi... - gi\|229898288\|ref\|ZP_04513435.1\| predicted inner membrane peptidase [Yersinia pestis biovar Orientali... gi\|166210633, gi... - gi\|166210633\|ref\|ZP_02236668.1\| peptidase, S49 family [Yersinia pestis biovar Antiqua str. B42003004... gi\|229693980, gi... - gi\|229897643\|ref\|ZP_04512799.1\| predicted inner membrane peptidase [Yersinia pestis biovar Orientali... gi\|229894900, gi... - gi\|229894900\|ref\|ZP_04510078.1\| predicted inner membrane peptidase [Yersinia pestis Pestoides A], gi... gi\|229559850, gi... - gi\|229902147\|ref\|ZP_04517268.1\| predicted inner membrane peptidase [Yersinia pestis Nepal516], gi\|22... Q66AJ2\|Q66AJ2_YERPS - Peptidase family U7 protein - Yersinia pseudotuberculosis gi\|229358044 - gi\|229358044\|ref\|YP_651485.2\| putative periplasmic protease [Yersinia pestis Antiqua] gi\|165938261, gi... - gi\|89105023\|ref\|ZP_01177551.1\| COG0616: Periplasmic serine proteases (ClpP class) [Yersinia pestis b... gi\|77636195, gi\|... - gi\|77636195\|ref\|ZP_00798271.1\| COG0616: Periplasmic serine proteases (ClpP class) [Yersinia pestis A... gi\|77629215, gi\|... - gi\|77629215\|ref\|ZP_00791801.1\| COG0616: Periplasmic serine proteases (ClpP class) [Yersinia pseudotu...	300.0	[0..1]	[349..1]
gi\|157157433, gi... - gi\|75190356\|ref\|ZP_00703623.1\| COG0616: Periplasmic serine proteases (ClpP class) [Escherichia coli ...	300.0	[0..1]	[349..1]
gi\|170020364, gi... - gi\|170020364\|ref\|YP_001725318.1\| putative periplasmic protease [Escherichia coli ATCC 8739], gi\|1697... gi\|75515116, gi\|... - gi\|75515116\|ref\|ZP_00737320.1\| COG0616: Periplasmic serine proteases (ClpP class) [Escherichia coli ... gi\|75195420, gi\|... - gi\|75195420\|ref\|ZP_00705490.1\| COG0616: Periplasmic serine proteases (ClpP class) [Escherichia coli ... gi\|124528349, gi... - gi\|124528349\|ref\|ZP_01699659.1\| Peptidase S49, N-terminal domain protein [Escherichia coli B], gi\|12...	299.0	[0..1]	[349..1]
gi\|77972520 - gi\|77972520\|ref\|ZP_00828084.1\| COG0616: Periplasmic serine proteases (ClpP class) [Yersinia frederik...	299.0	[0..1]	[349..1]
gi\|290470 - gi\|290470\|gb\|AAA24639.1\| sohB gi\|290470 - gi\|290470\|gb\|AAA24639.1\| sohB	299.0	[0..1]	[349..1]
gi\|82544274, gi\|... - gi\|82544274\|ref\|YP_408221.1\| putative periplasmic protease [Shigella boydii Sb227], gi\|81245685\|gb\|A... gi\|75179084, gi\|... - gi\|75179084\|ref\|ZP_00699102.1\| COG0616: Periplasmic serine proteases (ClpP class) [Shigella boydii B...	297.0	[0..1]	[349..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLSEYGLF LAKIVTVVLA IAAIAAIIVN VAQRNKRQRG ELRVNNLSEQ YKEMKEELAA  60
   61 ALMDSHQQKQ WHKAQKKKHK QEAKAAKAKA KLGEVA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.017729
Match:	PF08496.1
Description:	No description for PF08496.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDSKPRVWVL DFKGSMDAHE VNSLREEITA VLAAFKPQDQ VVLRLESPGG MVHGYGLAAS  60
   61 QLQRLRDKNI PLTVTVDKVA ASGGYMMACV ADKIVSAPFA IVGSIGVVAQ MPNFNRFLKS 120
  121 KDIDIELHTA GQYKRTLTLL GENTEEGREK FREELNETHQ LFKDFVKRMR PSLDIEQVAT 180
  181 GEHWYGQQAV EKGLVDEINT SDEVILSLME GREVVNVRYM QRKRLIDRFT GSAAESADRL 240
  241 LLRWWQRGQK PLM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.09691
Match:	2deoA
Description:	No description for 2deoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits