YRC Public Data Repository - Protein Structure Prediction

Protein:	SMPA_ECOLI
Organism:	Escherichia coli
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|152960846, gi... - gi\|77632097\|ref\|ZP_00794683.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia pseudotuberculosis...	158.0	[0..1]	[113..1]
gi\|194407839, gi... - gi\|194449535\|ref\|YP_002046688.1\| hypothetical protein SeHA_C2900 [Salmonella enterica subsp. enteric... gi\|16503838, gi\|... - gi\|25355715\|pir\|\|AH0834 small protein A [imported] - Salmonella enterica subsp. enterica serovar Typ... gi\|194442207, gi... - gi\|194442207\|ref\|YP_002041946.1\| small protein A [Salmonella enterica subsp. enterica serovar Newpor... gi\|168823038, gi... - gi\|205340653\|gb\|EDZ27417.1\| small protein A [Salmonella enterica subsp. enterica serovar Weltevreden... gi\|168464142, gi... - gi\|195633389\|gb\|EDX51803.1\| small protein A [Salmonella enterica subsp. enterica serovar Newport str... gi\|16761537 - gi\|16761537\|ref\|NP_457154.1\| hypothetical protein STY2871 [Salmonella enterica subsp. enterica serov... gi\|197244294, gi... - gi\|197266039\|ref\|ZP_03166113.1\| small protein A [Salmonella enterica subsp. enterica serovar Saintpa... gi\|197213987, gi... - gi\|197250284\|ref\|YP_002147620.1\| small protein A [Salmonella enterica subsp. enterica serovar Agona ... BAME_SALTY - Outer membrane protein assembly factor BamE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC ... gi\|194737236, gi... - gi\|194737236\|ref\|YP_002115694.1\| small protein A [Salmonella enterica subsp. enterica serovar Schwar... gi\|29143008, gi\|... - gi\|29143008\|ref\|NP_806350.1\| hypothetical protein t2639 [Salmonella enterica subsp. enterica serovar... gi\|194472077, gi... - gi\|194472077\|ref\|ZP_03078061.1\| small protein A [Salmonella enterica subsp. enterica serovar Kentuck... gi\|167992465, gi... - gi\|205329284\|gb\|EDZ16048.1\| small protein A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:... gi\|167553514, gi... - gi\|205322068\|gb\|EDZ09907.1\| small protein A [Salmonella enterica subsp. enterica serovar Saintpaul s... gi\|161364979, gi... - gi\|161615615\|ref\|YP_001589580.1\| hypothetical protein SPAB_03398 [Salmonella enterica subsp. enteric... gi\|168262142, gi... - gi\|205349210\|gb\|EDZ35841.1\| small protein A [Salmonella enterica subsp. enterica serovar Hadar str. ... gi\|168244708, gi... - gi\|205336478\|gb\|EDZ23242.1\| small protein A [Salmonella enterica subsp. enterica serovar Heidelberg ... gi\|197287845, gi... - gi\|197287845\|gb\|EDY27233.1\| small protein A [Salmonella enterica subsp. enterica serovar Schwarzengr... gi\|205331823, gi... - gi\|205331823\|gb\|EDZ18587.1\| small protein A [Salmonella enterica subsp. enterica serovar Kentucky st... gi\|213858004 - gi\|213858004\|ref\|ZP_03384975.1\| hypothetical protein SentesT_23185 [Salmonella enterica subsp. enter... gi\|213647049 - gi\|213647049\|ref\|ZP_03377102.1\| hypothetical protein SentesTy_06900 [Salmonella enterica subsp. ente... gi\|213582087 - gi\|213582087\|ref\|ZP_03363913.1\| hypothetical protein SentesTyph_13174 [Salmonella enterica subsp. en... gi\|213424855 - gi\|213424855\|ref\|ZP_03357605.1\| hypothetical protein SentesTyphi_03606 [Salmonella enterica subsp. e... gi\|224584536, gi... - gi\|224584536\|ref\|YP_002638334.1\| small membrane protein A [Salmonella enterica subsp. enterica serov... gi\|213974946 - gi\|213974946\|ref\|ZP_03402205.1\| hypothetical protein Salmonellaentericaenterica_10393 [Salmonella en... lcl\|NC_016856.1_... - [gene=smpA] [protein=hypothetical protein] [protein_id=YP_005238809.1] [location=2878991..2879329] gi\|205353721, gi... - gi\|205353721\|ref\|YP_002227522.1\| hypothetical protein SG2662 [Salmonella enterica subsp. enterica se... gi\|204321412, gi... - gi\|204929693\|ref\|ZP_03220767.1\| small protein A [Salmonella enterica subsp. enterica serovar Javiana... gi\|199603704, gi... - gi\|200386606\|ref\|ZP_03213218.1\| small protein A [Salmonella enterica subsp. enterica serovar Virchow... gi\|238909527 - gi\|238909527\|ref\|ZP_04653364.1\| hypothetical protein SentesTe_00120 [Salmonella enterica subsp. ente... gi\|197938651, gi... - gi\|198244135\|ref\|YP_002216693.1\| small protein A [Salmonella enterica subsp. enterica serovar Dublin... gi\|213416791 - gi\|213416791\|ref\|ZP_03349935.1\| hypothetical protein Salmonentericaenterica_01962 [Salmonella enteri... gi\|213052724 - gi\|213052724\|ref\|ZP_03345602.1\| hypothetical protein Salmoneentericaenterica_07291 [Salmonella enter... gi\|213028002 - gi\|213028002\|ref\|ZP_03342449.1\| hypothetical protein Salmonelentericaenterica_39100 [Salmonella ente... gi\|206709835, gi... - gi\|207858032\|ref\|YP_002244683.1\| hypothetical protein SEN2605 [Salmonella enterica subsp. enterica s... gi\|62181255, gi\|... - gi\|62181255\|ref\|YP_217672.1\| hypothetical protein SC2685 [Salmonella enterica subsp. enterica serova...	158.0	[0..1]	[112..1]
gi\|167419608, gi... - gi\|167419608\|ref\|ZP_02311361.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Orientalis str... gi\|167399779, gi... - gi\|167399779\|ref\|ZP_02305297.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Antiqua str. U... gi\|166211505, gi... - gi\|166211505\|ref\|ZP_02237540.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Antiqua str. B... gi\|165989506, gi... - gi\|166011558\|ref\|ZP_02232456.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Antiqua str. E... gi\|229013126 - gi\|229013126\|ref\|NP_670375.2\| hypothetical protein y3076 [Yersinia pestis KIM] gi\|186697561, gi... - gi\|186894535\|ref\|YP_001871647.1\| hypothetical protein YPTS_1215 [Yersinia pseudotuberculosis PB1/+],... gi\|169751733, gi... - gi\|170025199\|ref\|YP_001721704.1\| hypothetical protein YPK_2977 [Yersinia pseudotuberculosis YPIII], ... gi\|229310104 - gi\|229310104\|ref\|YP_069673.2\| hypothetical protein YPTB1138 [Yersinia pseudotuberculosis IP 32953] gi\|167056709, gi... - gi\|167423860\|ref\|ZP_02315613.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Mediaevalis st... gi\|229220782 - gi\|229220782\|ref\|NP_992425.2\| hypothetical protein YP_1052 [Yersinia pestis biovar Microtus str. 910... gi\|229843143, gi... - gi\|229843143\|ref\|ZP_04463289.1\| Outer membrane lipoprotein OmlA [Yersinia pestis biovar Orientalis s... gi\|229697405, gi... - gi\|229841039\|ref\|ZP_04461198.1\| Outer membrane lipoprotein OmlA [Yersinia pestis biovar Orientalis s... gi\|229893981, gi... - gi\|229893981\|ref\|ZP_04509167.1\| Outer membrane lipoprotein OmlA [Yersinia pestis Pestoides A], gi\|22... gi\|165923692, gi... - gi\|165924632\|ref\|ZP_02220464.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Orientalis str... gi\|162418747, gi... - gi\|162418747\|ref\|YP_001605901.1\| hypothetical protein YpAngola_A1375 [Yersinia pestis Angola], gi\|16... gi\|108776702, gi... - gi\|229903495\|ref\|ZP_04518608.1\| Outer membrane lipoprotein OmlA [Yersinia pestis Nepal516], gi\|22967... gi\|108778492, gi... - gi\|108806579\|ref\|YP_650495.1\| hypothetical protein YPA_0582 [Yersinia pestis Antiqua], gi\|108778492\|... gi\|165913783, gi... - gi\|89105211\|ref\|ZP_01177735.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia pestis biovar Orie... gi\|145599858, gi... - gi\|145599858\|ref\|YP_001163934.1\| hypothetical protein YPDSF_2593 [Yersinia pestis Pestoides F], gi\|1...	157.0	[0..1]	[113..1]
gi\|187731417, gi... - gi\|75175419\|ref\|ZP_00695646.1\| COG2913: Small protein A (tmRNA-binding) [Shigella boydii BS512], gi\|...	156.0	[0..1]	[113..1]
BAME_YERPE - Outer membrane protein assembly factor BamE OS=Yersinia pestis GN=bamE PE=3 SV=1 gi\|45435744, gi\|... - gi\|45440886\|ref\|NP_992425.1\| hypothetical protein YP_1052 [Yersinia pestis biovar Microtus str. 9100... gi\|21959993, gi\|... - gi\|22126952\|ref\|NP_670375.1\| hypothetical protein y3076 [Yersinia pestis KIM], gi\|21959993\|gb\|AAM866... gi\|218928272, gi... - gi\|218928272\|ref\|YP_002346147.1\| hypothetical protein YPO1104 [Yersinia pestis CO92], gi\|16121404\|re... gi\|51595482, gi\|... - gi\|51595482\|ref\|YP_069673.1\| hypothetical protein YPTB1138 [Yersinia pseudotuberculosis IP 32953], g... Q66DB1\|Q66DB1_YERPS - Conserved hypothetical small protein A precursor - Yersinia pseudotuberculosis gi\|149366896, gi... - gi\|149366896\|ref\|ZP_01888930.1\| small membrane lipoprotein [Yersinia pestis CA88-4125], gi\|149291270...	156.0	[0..1]	[113..4]
gi\|75233814 - gi\|75233814\|ref\|ZP_00718291.1\| COG2913: Small protein A (tmRNA-binding) [Escherichia coli E110019]	156.0	[0..1]	[113..1]
gi\|77958606, gi\|... - gi\|77958606\|ref\|ZP_00822637.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia bercovieri ATCC 43... gi\|77963359 - gi\|77963359\|ref\|ZP_00827169.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia mollaretii ATCC 43...	154.0	[0..1]	[113..1]
gi\|77974740 - gi\|77974740\|ref\|ZP_00830279.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia frederiksenii ATCC... gi\|77978426 - gi\|77978426\|ref\|ZP_00833855.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia intermedia ATCC 29...	153.0	[0..1]	[113..1]
gi\|36786683, gi\|... - gi\|37527249\|ref\|NP_930593.1\| hypothetical protein plu3375 [Photorhabdus luminescens subsp. laumondii...	152.0	[0..1]	[112..1]
gi\|33152315, gi\|... - gi\|33152315\|ref\|NP_873668.1\| small protein A [Haemophilus ducreyi 35000HP], gi\|33148538\|gb\|AAP96057....	149.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCKTLTAAA AVLLMLTAGC STLERVVYRP DINQGNYLTA NDVSKIRVGM TQQQVAYALG  60
   61 TPLMSDPFGT NTWFYVFRQQ PGHEGVTQQT LTLTFNSSGV LTNIDNKPAL SGN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.259637
Match:	PF04355.4
Description:	No description for PF04355.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits