YRC Public Data Repository - Protein Structure Prediction

Protein:	SIB2_ECOLI, SIRB...
Organism:	Escherichia coli
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIB2_ECOLI, SIRB....

Description	E-value	Query Range	Subject Range
gi\|77979775, gi\|... - gi\|77979775\|ref\|ZP_00835191.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia inte...	128.0	[0..3]	[129..4]
gi\|238788552, gi... - gi\|77973500\|ref\|ZP_00829047.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia fred...	127.0	[0..2]	[129..3]
gi\|238718359, gi... - gi\|77963728\|ref\|ZP_00827536.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia moll...	126.0	[0..3]	[129..4]
gi\|238783271, gi... - gi\|77959376\|ref\|ZP_00823396.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia berc...	125.0	[0..3]	[129..4]
gi\|167424756, gi... - gi\|167424756\|ref\|ZP_02316509.1\| sirB family protein [Yersinia pestis biovar Mediaevalis str. K197300... gi\|167471070 - gi\|167471070\|ref\|ZP_02335774.1\| sirB family protein [Yersinia pestis FV-1] gi\|170024408, gi... - gi\|170024408\|ref\|YP_001720913.1\| invasion gene expression up-regulator SirB [Yersinia pseudotubercul... gi\|186895376, gi... - gi\|186895376\|ref\|YP_001872488.1\| invasion gene expression up-regulator SirB [Yersinia pseudotubercul... gi\|22126173, gi\|... - gi\|22126173\|ref\|NP_669596.1\| hypothetical protein y2288 [Yersinia pestis KIM], gi\|21959137\|gb\|AAM858... gi\|25356410 - pir\|\|AE0246 probable membrane protein YPO2019 [imported] - Yersinia pestis (strain CO92) gi\|51596333, gi\|... - gi\|51596333\|ref\|YP_070524.1\| hypothetical protein YPTB2007 [Yersinia pseudotuberculosis IP 32953], g... gi\|45441671, gi\|... - gi\|45441671\|ref\|NP_993210.1\| hypothetical protein YP_1867 [Yersinia pestis biovar Microtus str. 9100... gi\|165926456, gi... - gi\|165926456\|ref\|ZP_02222288.1\| sirB family protein [Yersinia pestis biovar Orientalis str. F1991016... gi\|165991812, gi... - gi\|166009257\|ref\|ZP_02230155.1\| sirB family protein [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|218929130, gi... - gi\|218929130\|ref\|YP_002347005.1\| hypothetical protein YPO2019 [Yersinia pestis CO92], gi\|16122262\|re... Q66AX3\|Q66AX3_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|166208368, gi... - gi\|166211188\|ref\|ZP_02237223.1\| sirB family protein [Yersinia pestis biovar Antiqua str. B42003004],... gi\|167401416, gi... - gi\|167401416\|ref\|ZP_02306913.1\| sirB family protein [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|167420015, gi... - gi\|167420015\|ref\|ZP_02311768.1\| sirB family protein [Yersinia pestis biovar Orientalis str. MG05-102... gi\|89104290, gi\|... - gi\|89104290\|ref\|ZP_01176837.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108807399, gi... - gi\|108807399\|ref\|YP_651315.1\| hypothetical protein YPA_1403 [Yersinia pestis Antiqua], gi\|108779312\|... gi\|229680838, gi... - gi\|229901942\|ref\|ZP_04517063.1\| putative membrane protein [Yersinia pestis Nepal516], gi\|229680838\|g... gi\|77635380, gi\|... - gi\|77635380\|ref\|ZP_00797465.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|153948495, gi... - gi\|77629091\|ref\|ZP_00791677.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|149292462, gi... - gi\|149366049\|ref\|ZP_01888084.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149292462\|... gi\|229898073, gi... - gi\|229898073\|ref\|ZP_04513224.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. In... gi\|229693767, gi... - gi\|229897430\|ref\|ZP_04512586.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. PE... gi\|229894730, gi... - gi\|229894730\|ref\|ZP_04509910.1\| putative membrane protein [Yersinia pestis Pestoides A], gi\|22970220... gi\|145598394, gi... - gi\|145598394\|ref\|YP_001162470.1\| hypothetical protein YPDSF_1099 [Yersinia pestis Pestoides F], gi\|1...	125.0	[0..3]	[129..4]
gi\|77811846, gi\|... - gi\|77813011\|ref\|ZP_00812292.1\| Invasion gene expression up-regulator, SirB [Shewanella putrefaciens ...	124.0	[0..2]	[129..14]
gi\|124510614, gi... - gi\|124545638\|ref\|ZP_01704813.1\| Invasion gene expression up-regulator, SirB [Shewanella putrefaciens... gi\|145563601, gi... - gi\|146291911\|ref\|YP_001182335.1\| invasion gene expression up-regulator, SirB [Shewanella putrefacien... gi\|82719256, gi\|... - gi\|82743397\|ref\|ZP_00906046.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82719256\|...	123.0	[0..2]	[129..6]
gi\|114333201, gi... - gi\|69950396\|ref\|ZP_00638295.1\| Invasion gene expression up-regulator, SirB [Shewanella frigidimarina...	123.0	[0..2]	[129..6]
gi\|46914431, gi\|... - gi\|54309992\|ref\|YP_131012.1\| hypothetical protein PBPRA2843 [Photobacterium profundum SS9], gi\|46914...	122.0	[0..3]	[130..1]
gi\|49611645, gi\|... - gi\|50121119\|ref\|YP_050286.1\| hypothetical protein ECA2192 [Pectobacterium atrosepticum SCRI1043], gi...	122.0	[0..1]	[129..2]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFSTLLSV HLISIALSVG LLTLRFWLRY QKHPQAFARW TRIVPPVVDT LLLLSGIALM  60
   61 AKAHILPFSG QAQWLTEKLF GVIIYIVLGF IALDYRRMHS QQARIIAFPL ALVVLYIIIK 120
  121 LATTKVPLLG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.259637
Match:	PF04247.3
Description:	No description for PF04247.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits