YRC Public Data Repository - Protein Structure Prediction

Protein:	SAPF_ECOLI
Organism:	Escherichia coli
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAPF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|146296065, gi... - gi\|82500758\|ref\|ZP_00886157.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	340.0	[0..1]	[265..1]
gi\|78044045, gi\|... - gi\|78044045\|ref\|YP_359973.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Carboxydot...	339.0	[0..1]	[265..1]
gi\|25297027 - pir\|\|E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodura... gi\|15616207, gi\|... - gi\|15616207\|ref\|NP_244512.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus halodurans C...	338.0	[0..1]	[265..1]
gi\|56908581, gi\|... - gi\|56962344\|ref\|YP_174069.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus clausii KSM-...	335.0	[0..1]	[265..37]
gi\|23099907, gi\|... - gi\|23099907\|ref\|NP_693373.1\| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyen...	334.0	[0..2]	[265..5]
gi\|134298270, gi... - gi\|88946569\|ref\|ZP_01149644.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	332.0	[0..1]	[258..1]
gi\|110620066, gi... - gi\|147921514\|ref\|YP_684670.1\| putative ABC-type peptide transport system, ATPase component 2 [uncult...	331.0	[0..1]	[265..1]
gi\|89100170, gi\|... - gi\|89100170\|ref\|ZP_01173038.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus sp. NRRL B...	330.0	[0..1]	[265..9]
gi\|15791144, gi\|... - pir\|\|D84385 oligopeptide ABC transporter ATP-binding [imported] - Halobacterium sp. NRC-1, gi\|15791... gi\|169236900, gi... - gi\|169236900\|ref\|YP_001690100.1\| dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein [...	330.0	[0..2]	[265..16]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIETLLEVRN LSKTFRYRTG WFRRQTVEAV KPLSFTLREG QTLAIIGENG SGKSTLAKML  60
   61 AGMIEPTSGE LLIDDHPLHF GDYSFRSQRI RMIFQDPSTS LNPRQRISQI LDFPLRLNTD 120
  121 LEPEQRRKQI IETMRMVGLL PDHVSYYPHM LAPGQKQRLG LARALILRPK VIIADEALAS 180
  181 LDMSMRSQLI NLMLELQEKQ GISYIYVTQH IGMMKHISDQ VLVMHQGEVV ERGSTADVLA 240
  241 SPLHELTKRL IAGHFGEALT ADAWRKDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.522879
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits