YRC Public Data Repository - Protein Structure Prediction

Protein:	RZPD_ECOLI
Organism:	Escherichia coli
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RZPD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|4335687 - gi\|4335687\|gb\|AAD17383.1\| Rz protein [Bacteriophage H-19B]	199.0	[0..1]	[152..1]
gi\|74313215, gi\|... - gi\|74313215\|ref\|YP_311634.1\| endopeptidase-like protein [Shigella sonnei Ss046], gi\|73856692\|gb\|AAZ8...	197.0	[0..1]	[152..1]
gi\|190903354, gi... - gi\|75230290\|ref\|ZP_00716787.1\| hypothetical protein EcolB7_01001550 [Escherichia coli B7A], gi\|19116...	192.0	[0..1]	[153..1]
gi\|251784063, gi... - gi\|251784063\|ref\|YP_002998367.1\| hypothetical protein B21_00514 [Escherichia coli BL21], gi\|24237633... gi\|194423593, gi... - gi\|83587004\|ref\|ZP_00925634.1\| hypothetical protein Ecol1_01001746 [Escherichia coli 101-1], gi\|1944... gi\|254160624, gi... - gi\|254160624\|ref\|YP_003043732.1\| predicted murein endopeptidase [Escherichia coli B str. REL606], gi... gi\|253325500, gi... - gi\|254287428\|ref\|YP_003053176.1\| predicted murein endopeptidase [Escherichia coli BL21(DE3)], gi\|253...	192.0	[0..1]	[153..1]
gi\|110342935, gi... - gi\|110641343\|ref\|YP_669073.1\| endopeptidase [Escherichia coli 536], gi\|110342935\|gb\|ABG69172.1\| endo... gi\|190906668, gi... - gi\|75239650\|ref\|ZP_00723617.1\| hypothetical protein EcolF_01003006 [Escherichia coli F11], gi\|191173...	192.0	[0..1]	[153..1]
gi\|189360160, gi... - gi\|189360160\|gb\|EDU78579.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|187768511, gi... - gi\|187768511\|gb\|EDU32355.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|188999997, gi... - gi\|188999997\|gb\|EDU68983.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|168787629, gi... - gi\|189372557\|gb\|EDU90973.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|168749755, gi... - gi\|188016010\|gb\|EDU54132.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|168756493, gi... - gi\|189356330\|gb\|EDU74749.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|189367189, gi... - gi\|189367189\|gb\|EDU85605.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|15830877, gi\|... - gi\|15830877\|ref\|NP_309650.1\| putative endopeptidase [Escherichia coli O157:H7 str. Sakai], gi\|133610... gi\|25289636 - pir\|\|G90831 probable endopeptidase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 050... gi\|15830877, gi\|... - gi\|15830877\|ref\|NP_309650.1\| putative endopeptidase [Escherichia coli O157:H7], gi\|13361087\|dbj\|BAB3... gi\|208737613, gi... - gi\|208822128\|ref\|ZP_03262447.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4042], ... gi\|209400367, gi... - gi\|209400367\|ref\|YP_002270068.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4115],... gi\|217318780, gi... - gi\|217328353\|ref\|ZP_03444435.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. TW14588],... gi\|189377290, gi... - gi\|189377290\|gb\|EDU95706.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|195938784 - gi\|195938784\|ref\|ZP_03084166.1\| putative endopeptidase [Escherichia coli O157:H7 str. EC4024] gi\|208806416, gi... - gi\|208806416\|ref\|ZP_03248753.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4206], ... gi\|208732346, gi... - gi\|208815698\|ref\|ZP_03256877.1\| bacteriophage lysis protein [Escherichia coli O157:H7 str. EC4045], ...	191.0	[0..1]	[153..1]
tr\|A0A109ZS50\|A0... - Endopeptidase OS=Escherichia coli (strain K12) GN=C3026_04105 PE=4 SV=1 gi\|17066646 - gi\|17066646\|gb\|AAL35338.1\|AF441251_1 endopeptidase [Paracoccidioides brasiliensis] SPAN1_LAMBD - Spanin, inner membrane subunit OS=Enterobacteria phage lambda GN=Rz PE=1 SV=1 gi\|251784266, gi... - gi\|251784266\|ref\|YP_002998570.1\| hypothetical protein B21_00729 [Escherichia coli BL21], gi\|24237653... gi\|238863802, gi... - gi\|238903114\|ref\|YP_002928910.1\| DLP12 prophage; putative murein endopeptidase [Escherichia coli BW2... gi\|194021570 - gi\|194021570\|gb\|ACF32379.1\| cell lysis protein [Enterobacteria phage DE3] gi\|254287636, gi... - gi\|254287636\|ref\|YP_003053384.1\| cell lysis protein [Escherichia coli BL21(DE3)], gi\|253976943\|gb\|AC...	191.0	[0..1]	[153..1]
gi\|91071905, gi\|... - gi\|91210331\|ref\|YP_540317.1\| putative Rz endopeptidase from lambdoid prophage DLP12 [Escherichia col... gi\|115512470, gi... - gi\|117623346\|ref\|YP_852259.1\| putative Rz endopeptidase from lambdoid prophage [Escherichia coli APE...	190.0	[0..1]	[153..5]
gi\|83569062, gi\|... - gi\|83569062\|ref\|ZP_00920523.1\| hypothetical protein Sdys1_01002668 [Shigella dysenteriae 1012], gi\|1...	190.0	[0..1]	[152..1]
gi\|117623615, gi... - gi\|117623615\|ref\|YP_852528.1\| hypothetical protein APECO1_515 [Escherichia coli APEC O1], gi\|1155127...	189.0	[0..1]	[152..5]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVTAIISA LIICIIVSLS WAVNHYRDNA IAYKVQRDKN ARELKLANAA ITDMQMRQRD  60
   61 VAALDAKYTK ELADAKAEND ALRDDVAAGR RRLHIKAVCQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.969
Match:	1ic2A
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [101-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVREATTASG VDNAASPRLA DTAERDYFTL RERLITMQKQ LEGTQKYINE QCR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.107905
Match:	PF03245.4
Description:	No description for PF03245.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits