YRC Public Data Repository - Protein Structure Prediction

Protein:	RUS_ECOLI
Organism:	Escherichia coli
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|157077118, gi... - gi\|75190328\|ref\|ZP_00703595.1\| COG4570: Holliday junction resolvase [Escherichia coli E24377A], gi\|1...	149.0	[0..2]	[118..1]
gi\|192931815, gi... - gi\|75259330\|ref\|ZP_00730649.1\| COG4570: Holliday junction resolvase [Escherichia coli E22], gi\|19306...	149.0	[0..2]	[120..1]
gi\|115513263, gi... - gi\|117624139\|ref\|YP_853052.1\| Holliday junction resolvase [Escherichia coli APEC O1], gi\|115513263\|g...	148.0	[0..2]	[118..3]
gi\|75510912 - gi\|75510912\|ref\|ZP_00733688.1\| COG4570: Holliday junction resolvase [Escherichia coli 53638]	147.0	[0..2]	[120..3]
gi\|75207875, gi\|... - gi\|75207875\|ref\|ZP_00708343.1\| COG4570: Holliday junction resolvase [Escherichia coli B171], gi\|1944...	147.0	[0..2]	[120..1]
gi\|193071750, gi... - gi\|75214645\|ref\|ZP_00713165.1\| COG4570: Holliday junction resolvase [Escherichia coli E110019], gi\|1...	147.0	[0..2]	[120..1]
gi\|24113366, gi\|... - gi\|24113366\|ref\|NP_707876.1\| putative crossover junction endodeoxyribonuclease [Shigella flexneri 2a... gi\|30063426, gi\|... - gi\|30063426\|ref\|NP_837597.1\| putative crossover junction endodeoxyribonuclease [Shigella flexneri 2a... gi\|110805954, gi... - gi\|110805954\|ref\|YP_689474.1\| putative endonuclease encoded by cryptic prophage [Shigella flexneri 5...	147.0	[0..2]	[117..3]
gi\|25289202 - pir\|\|C90764 hypothetical protein ECs1083 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15830337, gi\|... - gi\|15830337\|ref\|NP_309110.1\| putative crossover junction endodeoxyribonuclease [Escherichia coli O15... gi\|15830337, gi\|... - gi\|15830337\|ref\|NP_309110.1\| putative crossover junction endodeoxyribonuclease [Escherichia coli O15... gi\|254792193, gi... - gi\|254792193\|ref\|YP_003077030.1\| putative endonuclease of cryptic prophage CP-933M [Escherichia coli... gi\|189376541, gi... - gi\|189376541\|gb\|EDU94957.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157:H7 ... gi\|168787429, gi... - gi\|189372722\|gb\|EDU91138.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157:H7 ... gi\|208809680, gi... - gi\|208809680\|ref\|ZP_03252017.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157... gi\|195935182 - gi\|195935182\|ref\|ZP_03080564.1\| putative crossover junction endodeoxyribonuclease [Escherichia coli ... gi\|208737567, gi... - gi\|208822082\|ref\|ZP_03262401.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157... gi\|208816360, gi... - gi\|208816360\|ref\|ZP_03257539.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157... gi\|217321787, gi... - gi\|217325566\|ref\|ZP_03441650.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157... gi\|209161914, gi... - gi\|209400514\|ref\|YP_002269658.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O15... gi\|189358367, gi... - gi\|189358367\|gb\|EDU76786.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157:H7 ... gi\|75235176, gi\|... - gi\|75235176\|ref\|ZP_00719418.1\| COG4570: Holliday junction resolvase [Escherichia coli E110019], gi\|1... gi\|168751245, gi... - gi\|188014701\|gb\|EDU52823.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157:H7 ... gi\|189363167, gi... - gi\|189363167\|gb\|EDU81586.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157:H7 ... gi\|168764843, gi... - gi\|189365238\|gb\|EDU83654.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157:H7 ... gi\|168780942, gi... - gi\|189001291\|gb\|EDU70277.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157:H7 ... gi\|168777416, gi... - gi\|187767315\|gb\|EDU31159.1\| crossover junction endodeoxyribonuclease RusA [Escherichia coli O157:H7 ...	145.0	[0..2]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTYSITLPW PPSNNRYYRH NRGRTHVSAE GQAYRDNVAR IIKNAMLDIG LAMPVKIRIE  60
   61 CHMPDRRRRD LDNLQKAAFD ALTKAGFWLD DAQVVDYRVV KMPVTKGGRL ELTITEMGNE 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.154902
Match:	1q8rA
Description:	Structure of E.coli RusA Holliday junction resolvase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits