YRC Public Data Repository - Protein Structure Prediction

Protein:	RSPA_ECOLI
Organism:	Escherichia coli
Length:	404 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91210791, gi\|... - gi\|91210791\|ref\|YP_540777.1\| starvation sensing protein RspA [Escherichia coli UTI89], gi\|91072365\|g... gi\|227836991, gi... - gi\|227886062\|ref\|ZP_04003867.1\| possible galactonate dehydratase [Escherichia coli 83972], gi\|227836... gi\|115512891, gi... - gi\|117623767\|ref\|YP_852680.1\| starvation sensing protein RspA [Escherichia coli APEC O1], gi\|1155128... gi\|237705520, gi... - gi\|237705520\|ref\|ZP_04536001.1\| starvation sensing protein rspA [Escherichia sp. 3_2_53FAA], gi\|2269... MAND_ECOL6 - D-galactonate dehydratase family member RspA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ...	366.0	[0..1]	[404..12]
gi\|75236704, gi\|... - gi\|75236704\|ref\|ZP_00720783.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol... gi\|110641707, gi... - gi\|110641707\|ref\|YP_669437.1\| starvation sensing protein RspA [Escherichia coli 536], gi\|110343299\|g... gi\|215264828, gi... - gi\|215486756\|ref\|YP_002329187.1\| predicted dehydratase [Escherichia coli O127:H6 str. E2348/69], gi\|... gi\|218558451, gi... - gi\|218558451\|ref\|YP_002391364.1\| putative enolase/dehydratase [Escherichia coli S88], gi\|218365220\|e...	365.0	[0..1]	[404..1]
gi\|75230970, gi\|... - gi\|75230970\|ref\|ZP_00717419.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol...	365.0	[0..1]	[404..1]
gi\|110345893, gi... - gi\|110644301\|ref\|YP_672031.1\| starvation sensing protein RspA [Escherichia coli 536], gi\|110345893\|g... gi\|227885292, gi... - gi\|227885292\|ref\|ZP_04003097.1\| possible dehydratase [Escherichia coli 83972], gi\|227837744\|gb\|EEJ48... gi\|218429811, gi... - gi\|218692247\|ref\|YP_002400459.1\| putative enolase/dehydratase [Escherichia coli ED1a], gi\|218429811\|...	363.0	[0..1]	[404..21]
gi\|237702998, gi... - gi\|237702998\|ref\|ZP_04533479.1\| starvation sensing protein RspA [Escherichia sp. 3_2_53FAA], gi\|2269... gi\|117626230, gi... - gi\|117626230\|ref\|YP_859553.1\| starvation sensing protein RspA [Escherichia coli APEC O1], gi\|1155153...	363.0	[0..1]	[404..21]
gi\|213650645 - gi\|213650645\|ref\|ZP_03380698.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica... gi\|16502653, gi\|... - gi\|25512940\|pir\|\|AG0679 starvation sensing protein RspA [imported] - Salmonella enterica subsp. ente... gi\|213580894 - gi\|213580894\|ref\|ZP_03362720.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica... gi\|214002565 - gi\|214002565\|ref\|ZP_03413300.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica... gi\|213855759 - gi\|213855759\|ref\|ZP_03383999.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica... gi\|29141878, gi\|... - gi\|29141878\|ref\|NP_805220.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica se... gi\|213428608 - gi\|213428608\|ref\|ZP_03361358.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica... gi\|16760358 - gi\|16760358\|ref\|NP_455975.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica se... gi\|213053239 - gi\|213053239\|ref\|ZP_03346117.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica...	363.0	[0..1]	[404..1]
gi\|205327674, gi... - gi\|205327674\|gb\|EDZ14438.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica ser... gi\|168819265, gi... - gi\|205343701\|gb\|EDZ30465.1\| starvation sensing protein RspA [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=rspA] [protein=putative dehydratase] [protein_id=YP_005237387.1] [location=1592226..1593440] gi\|16764850, gi\|... - gi\|16764850\|ref\|NP_460465.1\| putative dehydratase [Salmonella typhimurium LT2], gi\|16420025\|gb\|AAL20...	362.0	[0..1]	[404..1]
gi\|77974438, gi\|... - gi\|77974438\|ref\|ZP_00829978.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol...	361.0	[0..1]	[404..4]
gi\|192929390, gi... - gi\|75258055\|ref\|ZP_00729516.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol... gi\|218354407, gi... - gi\|218697675\|ref\|YP_002405342.1\| putative enolase/dehydratase [Escherichia coli 55989], gi\|218354407... gi\|194429392, gi... - gi\|75209353\|ref\|ZP_00709589.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol... gi\|157156307, gi... - gi\|75188698\|ref\|ZP_00701965.1\| COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enol... gi\|209921445, gi... - gi\|209921445\|ref\|YP_002295529.1\| starvation sensing protein [Escherichia coli SE11], gi\|209914704\|db...	361.0	[0..1]	[404..1]

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Predicted Domain #1

Region A:
Residues: [1-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVKAEVFV TCPGRNFVTL KITTEDGITG LGDATLNGRE LSVASYLQDH LCPQLIGRDA  60
   61 HRIEDIWQFF YKGAYWRRGP VTMSAISAVD MALWDIKAKA ANMPLYQLLG GASREGVMVY 120
  121 CHTTGHSIDE ALDDYARHQE LGFKAIRVQC GIPGMKTTYG MSKGKGLAYE PATKGQWPEE 180
  181 QLWSTEKYLD FMPKLFDAVR NKFGFNEHLL HDMHHRLTPI EAARFGKSIE DYRMFWMEDP 240
  241 TPAENQECFR LIRQHTVTPI AVGEVFNSIW DCKQLIEEQL IDYIRTTLTH AGGITGMRRI 300
  301 ADFASLYQVR TGSHGPSDLS PVCMAAALHF DLWVPNFGVQ EYMGYSEQML EVFPHNWTFD 360
  361 NGYMHPGDKP GLGIEFDEKL AAKYPYEPAY LPVARLEDGT LWNW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.69897
Match:	2o56A
Description:	No description for 2o56A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits