YRC Public Data Repository - Protein Structure Prediction

Protein:	RS28_DANRE
Organism:	Danio rerio
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS28_DANRE.

Description	E-value	Query Range	Subject Range
gi\|45268967 - gi\|45268967\|gb\|AAS55896.1\| 40S ribosomal protein S28 [Sus scrofa]	126.0	[0..1]	[69..12]
gi\|169171642, gi... - gi\|169171642\|ref\|XP_001721356.1\| PREDICTED: similar to 40S ribosomal protein S28 [Homo sapiens], gi\|...	123.0	[0..1]	[69..1]
gi\|61369337 - gi\|61369337\|gb\|AAX43319.1\| ribosomal protein S28 [synthetic construct]	121.0	[0..1]	[69..1]
gi\|82895184, gi\|... - gi\|94373777\|ref\|XP_996233.1\| PREDICTED: similar to 40S ribosomal protein S28 [Mus musculus], gi\|8289...	121.0	[0..1]	[69..1]
gi\|47216403 - gi\|47216403\|emb\|CAG01954.1\| unnamed protein product [Tetraodon nigroviridis]	121.0	[0..1]	[69..1]
gi\|109102985 - gi\|109102985\|ref\|XP_001115206.1\| PREDICTED: similar to 40S ribosomal protein S28 [Macaca mulatta]	121.0	[0..1]	[69..1]
gi\|46108760, gi\|... - gi\|46108760\|ref\|XP_381438.1\| hypothetical protein FG01262.1 [Gibberella zeae PH-1], gi\|42547728\|gb\|E...	121.0	[0..1]	[66..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASRVQPIK LARVTKVLGR TGSQGQCTQV RVEFMDDSNR SIIRNVKGPV REGDVLTLLE  60
   61 SEREARRLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.221849
Match:	1ne3A
Description:	Solution structure of ribosomal protein S28E from Methanobacterium Thermoautotrophicum. Ontario Centre for Structural Proteomics target MTH0256_1_68; Northeast Structural Genomics Target TT744
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits