YRC Public Data Repository - Protein Structure Prediction

Protein:	RS23_NEUCR
Organism:	Neurospora crassa
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS23_NEUCR.

Description	E-value	Query Range	Subject Range
gi\|115968471, gi... - gi\|115968471\|ref\|XP_001182865.1\| PREDICTED: similar to yeast ribosomal protein S28 homologue [Strong...	189.0	[0..3]	[145..17]
gi\|50761979 - gi\|50761979\|ref\|XP_424903.1\| PREDICTED: similar to ribosomal protein S23 [Gallus gallus]	187.0	[0..4]	[145..107]
RS23_ASPFU - 40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1 RS23_ASPFU - 40S ribosomal protein S23 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC ... gi\|159131067 - gi\|159131067\|gb\|EDP56180.1\| ribosomal protein S23 (S12) [Aspergillus fumigatus A1163]	185.0	[0..1]	[145..1]
gi\|62083355 - gi\|62083355\|gb\|AAX62402.1\| ribosomal protein S23 [Lysiphlebus testaceipes]	184.0	[0..4]	[145..2]
gi\|109500599, gi... - gi\|62660444\|ref\|XP_573594.1\| PREDICTED: similar to ribosomal protein S23 [Rattus norvegicus], gi\|109...	184.0	[0..4]	[145..2]
gi\|72679974 - gi\|72679974\|gb\|AAI00604.1\| Ribosomal protein S23 [Mus musculus]	184.0	[0..4]	[145..2]
RS23_MOUSE - 40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=1 SV=3 ENSCJAT00000021893 - null gi\|363744767\|ref... - PREDICTED: 40S ribosomal protein S23 [Gallus gallus] gi\|109077827 - gi\|109077827\|ref\|XP_001111446.1\| PREDICTED: similar to ribosomal protein S23 [Macaca mulatta] gi\|197129851, gi... - gi\|224092240\|ref\|XP_002190993.1\| PREDICTED: putative ribosomal protein S23 [Taeniopygia guttata], gi... RS23_CHILA - 40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1 gi\|187609265, gi... - gi\|57084757\|ref\|XP_536303.1\| PREDICTED: similar to ribosomal protein S23 isoform 1 [Canis familiaris... RS23_BOVIN - 40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1 gi\|149727004 - gi\|149727004\|ref\|XP_001504690.1\| PREDICTED: similar to ribosomal protein S23 [Equus caballus] tr\|G3HIY3\|G3HIY3... - 40S ribosomal protein S23 OS=Cricetulus griseus GN=I79_010614 PE=3 SV=1 RS23_RAT - 40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=1 SV=3 gi\|149629620 - gi\|149629620\|ref\|XP_001511270.1\| PREDICTED: similar to yeast ribosomal protein S28 homologue [Ornith... RPS23 - ribosomal protein S23 gi\|55624034 - gi\|55624034\|ref\|XP_517668.1\| PREDICTED: similar to yeast ribosomal protein S28 homologue isoform 2 [...	184.0	[0..4]	[145..2]
gi\|110771708 - gi\|110771708\|ref\|XP_624651.2\| PREDICTED: similar to Ribosomal protein S23 CG8415-PA [Apis mellifera]	184.0	[0..4]	[145..2]
gi\|58332846, gi\|... - gi\|89272439\|emb\|CAJ82645.1\| ribosomal protein S23 [Xenopus tropicalis], gi\|58332846\|ref\|NP_001011499...	183.0	[0..4]	[145..2]
gi\|6006399 - gi\|6006399\|emb\|CAB56815.1\| ribosomal protein S28 [Aspergillus niger]	183.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGKPRGLN AARKLRNNRR EQRWSDLHYK KRALGTAFKS SPFGGSSHAK GIVLEKVGVE  60
   61 AKQPNSAIRK CVRVQLIKNG KKVTAFVPND GCLNFVDEND EVLLAGFGRK GKAKGDIPGV 120
  121 RFKVVKVSGV GLLALWKEKK EKPRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.045757
Match:	1s1hL
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits