YRC Public Data Repository - Protein Structure Prediction

Protein:	RS23_BRUMA
Organism:	Brugia malayi
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS23_BRUMA.

Description	E-value	Query Range	Subject Range
gi\|115968471, gi... - gi\|115968471\|ref\|XP_001182865.1\| PREDICTED: similar to yeast ribosomal protein S28 homologue [Strong...	191.0	[0..2]	[143..18]
gi\|50761979 - gi\|50761979\|ref\|XP_424903.1\| PREDICTED: similar to ribosomal protein S23 [Gallus gallus]	191.0	[0..1]	[143..106]
gi\|187036559, gi... - gi\|39585649\|emb\|CAE59851.1\| Hypothetical protein CBG03324 [Caenorhabditis briggsae], gi\|187036559\|em... CRE15584, CRE18329 - RP14819 WBGene00071917 locus:Cre-rps-23 status:Predicted, RP14819 WBGene00077068 status:Predicted gi\|157756785 - gi\|157756785\|ref\|XP_001670736.1\| Hypothetical protein CBG03324 [Caenorhabditis briggsae AF16] rps-23 - ribosomal protein S23 status:Confirmed UniProt:Q19877 protein_id:CAA94601.1	188.0	[0..1]	[143..1]
gi\|109500599, gi... - gi\|62660444\|ref\|XP_573594.1\| PREDICTED: similar to ribosomal protein S23 [Rattus norvegicus], gi\|109...	188.0	[0..1]	[143..1]
gi\|84380935, gi\|... - gi\|84380935\|gb\|ABC58767.1\| ribosomal protein S23 [Brugia malayi], gi\|170592158\|ref\|XP_001900836.1\| 4...	186.0	[0..1]	[143..1]
RS23_PIG - 40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=1 SV=3	186.0	[0..1]	[143..1]
gi\|72679974 - gi\|72679974\|gb\|AAI00604.1\| Ribosomal protein S23 [Mus musculus]	186.0	[0..1]	[143..1]
RS23_MOUSE - 40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=1 SV=3 ENSCJAT00000021893 - null gi\|363744767\|ref... - PREDICTED: 40S ribosomal protein S23 [Gallus gallus] gi\|109077827 - gi\|109077827\|ref\|XP_001111446.1\| PREDICTED: similar to ribosomal protein S23 [Macaca mulatta] gi\|197129851, gi... - gi\|224092240\|ref\|XP_002190993.1\| PREDICTED: putative ribosomal protein S23 [Taeniopygia guttata], gi... RS23_CHILA - 40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1 gi\|187609265, gi... - gi\|57084757\|ref\|XP_536303.1\| PREDICTED: similar to ribosomal protein S23 isoform 1 [Canis familiaris... RS23_BOVIN - 40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1 gi\|149727004 - gi\|149727004\|ref\|XP_001504690.1\| PREDICTED: similar to ribosomal protein S23 [Equus caballus] tr\|G3HIY3\|G3HIY3... - 40S ribosomal protein S23 OS=Cricetulus griseus GN=I79_010614 PE=3 SV=1 RS23_RAT - 40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=1 SV=3 gi\|149629620 - gi\|149629620\|ref\|XP_001511270.1\| PREDICTED: similar to yeast ribosomal protein S28 homologue [Ornith... RPS23 - ribosomal protein S23 gi\|55624034 - gi\|55624034\|ref\|XP_517668.1\| PREDICTED: similar to yeast ribosomal protein S28 homologue isoform 2 [...	186.0	[0..1]	[143..1]
RS23_ICTPU - 40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1	185.0	[0..1]	[143..1]
gi\|119903572, gi... - gi\|76673100\|ref\|XP_869860.1\| PREDICTED: similar to yeast ribosomal protein S28 homologue isoform 1 [...	185.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKPKGIRAA RKLKTHRQAQ RWNDKGYKKA HLGTRWKANP FGTASHAKGI VLEKVGVEAK  60
   61 QPNSAIRKCV RVQLIKNGKK ITAFVPNDGC LNFIEENDEV LVAGFGRKGH AVGDIPGVRF 120
  121 KIVKVANTSL IALFKGKKER PRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1s1hL
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits