YRC Public Data Repository - Protein Structure Prediction

Protein:	RS22_ECOLI
Organism:	Escherichia coli
Length:	45 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS22_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|213850347 - gi\|213850347\|ref\|ZP_03381245.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... gi\|214001411 - gi\|214001411\|ref\|ZP_03412146.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... gi\|238911800 - gi\|238911800\|ref\|ZP_04655637.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... gi\|224583941, gi... - gi\|224583941\|ref\|YP_002637739.1\| 30S ribosomal protein S22 [Salmonella enterica subsp. enterica sero... gi\|213426466 - gi\|213426466\|ref\|ZP_03359216.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... gi\|213580044 - gi\|213580044\|ref\|ZP_03361870.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... gi\|213615611 - gi\|213615611\|ref\|ZP_03371437.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... gi\|213649196 - gi\|213649196\|ref\|ZP_03379249.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... SRA_SALPA - Stationary-phase-induced ribosome-associated protein OS=Salmonella paratyphi A GN=sra PE=3 SV=1 gi\|207856940, gi... - gi\|207856940\|ref\|YP_002243591.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica sero... gi\|213023912 - gi\|213023912\|ref\|ZP_03338359.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... gi\|213052166 - gi\|213052166\|ref\|ZP_03345044.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... SRA_SALCH - Stationary-phase-induced ribosome-associated protein OS=Salmonella choleraesuis GN=sra PE=3 SV=1 gi\|213417483 - gi\|213417483\|ref\|ZP_03350625.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serov... gi\|194410245, gi... - gi\|194451941\|ref\|YP_002045606.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=rpsV] [protein=30S ribosomal subunit S22] [protein_id=YP_005237455.1] [location=1655468..16556... gi\|197362413, gi... - gi\|197362413\|ref\|YP_002142050.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica sero... SRA_SALCH - Stationary-phase-induced ribosome-associated protein OS=Salmonella choleraesuis GN=sra PE=3 SV=1 gi\|197939338, gi... - gi\|198244822\|ref\|YP_002215581.1\| 30S ribosomal protein, S22 family [Salmonella enterica subsp. enter... gi\|205272530, gi... - gi\|205352749\|ref\|YP_002226550.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica sero... SRA_SALTI - Stationary-phase-induced ribosome-associated protein OS=Salmonella typhi GN=sra PE=3 SV=1 gi\|16760308 - gi\|16760308\|ref\|NP_455925.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serovar ... SRA_SALTY - Stationary-phase-induced ribosome-associated protein OS=Salmonella typhimurium (strain LT2 / SGSC141... gi\|29141927, gi\|... - gi\|29141927\|ref\|NP_805269.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica serovar ... SRA_SALCH - Stationary-phase-induced ribosome-associated protein OS=Salmonella choleraesuis (strain SC-B67) GN=s... SRA_SALPA - Stationary-phase-induced ribosome-associated protein OS=Salmonella paratyphi A (strain ATCC 9150 / S... gi\|168229966, gi... - gi\|205335438\|gb\|EDZ22202.1\| 30S ribosomal protein, S22 family [Salmonella enterica subsp. enterica s... gi\|168260258, gi... - gi\|205351074\|gb\|EDZ37705.1\| 30S ribosomal protein, S22 family [Salmonella enterica subsp. enterica s... gi\|168463006, gi... - gi\|195634429\|gb\|EDX52781.1\| 30S ribosomal protein, S22 family [Salmonella enterica subsp. enterica s... RS22_SALTI, SRA_... - Stationary-phase-induced ribosome-associated protein OS=Salmonella typhi GN=sra PE=3 SV=1, 30S ribos... gi\|168819334, gi... - gi\|205343898\|gb\|EDZ30662.1\| 30S ribosomal protein, S22 family [Salmonella enterica subsp. enterica s... gi\|161503332, gi... - gi\|161503332\|ref\|YP_001570444.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. arizonae sero... gi\|161363359, gi... - gi\|161613995\|ref\|YP_001587960.1\| 30S ribosomal subunit S22 [Salmonella enterica subsp. enterica sero... gi\|167549974, gi... - gi\|205325062\|gb\|EDZ12901.1\| 30S ribosomal protein, S22 family [Salmonella enterica subsp. enterica s... SRA_SALTY - Stationary-phase-induced ribosome-associated protein OS=Salmonella typhimurium GN=sra PE=3 SV=1 gi\|205328988, gi... - gi\|205328988\|gb\|EDZ15752.1\| 30S ribosomal protein, S22 family [Salmonella enterica subsp. enterica s... RS22_SALTY, SRA_... - Stationary-phase-induced ribosome-associated protein OS=Salmonella typhimurium GN=sra PE=3 SV=1, 30S...	64.0	[0..1]	[44..1]

Back

Predicted Domain #1

Region A:
Residues: [1-45]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNRQARHI LGLDHKISNQ RKIVTEGDKS SVVNNPTGRK RPAEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits