YRC Public Data Repository - Protein Structure Prediction

Protein:	RS14_CHLRE
Organism:	Chlamydomonas reinhardtii
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS14_CHLRE.

Description	E-value	Query Range	Subject Range
gi\|61369149 - gi\|61369149\|gb\|AAX43292.1\| ribosomal protein S14 [synthetic construct]	181.0	[0..1]	[142..1]
gi\|37748505, gi\|... - gi\|41152464\|ref\|NP_956320.1\| ribosomal protein S14 [Danio rerio], gi\|37748505\|gb\|AAH59561.1\| Ribosom...	181.0	[0..1]	[142..1]
gi\|15294039 - gi\|15294039\|gb\|AAK95196.1\|AF402822_1 40S ribosomal protein S14 [Ictalurus punctatus]	180.0	[0..1]	[142..1]
ENSPTRT00000032220 - null gi\|47221346 - gi\|47221346\|emb\|CAF97264.1\| unnamed protein product [Tetraodon nigroviridis] RS14_CRIGR - 40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3 gi\|149726729 - gi\|149726729\|ref\|XP_001503764.1\| PREDICTED: similar to ribosomal protein S14 [Equus caballus] gi\|53136692, gi\|... - gi\|71895291\|ref\|NP_001025790.1\| ribosomal protein S14 [Gallus gallus], gi\|53136692\|emb\|CAG32675.1\| h... gi\|149567989 - gi\|149567989\|ref\|XP_001513237.1\| PREDICTED: similar to 40S ribosomal protein S14 [Ornithorhynchus an... gi\|149064353, gi... - gi\|37231722\|gb\|AAH58472.1\| Rps14 protein [Rattus norvegicus], gi\|149064357\|gb\|EDM14560.1\| rCG46686, ... gi\|77748236, gi\|... - gi\|77748236\|gb\|AAI06305.1\| Rps14-prov protein [Xenopus laevis], gi\|27735476\|gb\|AAH41512.1\| Rps14-pro... gi\|57085269, gi\|... - gi\|73953671\|ref\|XP_867612.1\| PREDICTED: similar to ribosomal protein S14 isoform 4 [Canis familiaris... gi\|123980122, gi... - gi\|61358971\|gb\|AAX41648.1\| ribosomal protein S14 [synthetic construct], gi\|208967326\|dbj\|BAG73677.1\|... gi\|123204259 - gi\|123204259\|gb\|ABM73530.1\| 40S ribosomal protein S14 [Dicentrarchus labrax] gi\|126290594 - gi\|126290594\|ref\|XP_001369354.1\| PREDICTED: similar to 40S ribosomal protein S14 [Monodelphis domest... gi\|62859657, gi\|... - gi\|62859657\|ref\|NP_001016722.1\| hypothetical protein LOC549476 [Xenopus (Silurana) tropicalis], gi\|1... CCDS4307.1_1 - null gi\|119895729, gi... - gi\|76623515\|ref\|XP_586495.2\| PREDICTED: similar to ribosomal protein S14 [Bos taurus], gi\|119895729\|... gi\|60417184 - gi\|60417184\|emb\|CAH57703.1\| 40S ribosomal protein S14 [Platichthys flesus] RPS14 - ribosomal protein S14 RS14_MOUSE - 40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=1 SV=3 gi\|542149549\|ref... - PREDICTED: 40S ribosomal protein S14 isoform X2 [Zonotrichia albicollis], PREDICTED: 40S ribosomal p... ENSOCUP000000206... - pep:novel chromosome:oryCun2:1:60521557:60522084:-1 gene:ENSOCUG00000026323 transcript:ENSOCUT000000... gi\|224067701, gi... - gi\|224067701\|ref\|XP_002198745.1\| PREDICTED: similar to 40S ribosomal protein S14 [Taeniopygia guttat... ENSMMUG000000028... - null, null, null, null	180.0	[0..1]	[142..1]
gi\|3097244 - gi\|3097244\|emb\|CAA69615.1\| ribosomal protein S14 [Mus musculus]	179.0	[0..1]	[142..1]
RS14_RAT - 40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3	178.0	[0..1]	[142..1]
gi\|28189929 - gi\|28189929\|dbj\|BAC56579.1\| similar to ribosomal protein S14 [Bos taurus]	177.0	[0..1]	[140..7]
RS14A_DROYA - 40S ribosomal protein S14a OS=Drosophila yakuba GN=RpS14a PE=2 SV=1 gi\|194763635, gi... - gi\|194763635\|ref\|XP_001963938.1\| GF21290 [Drosophila ananassae], gi\|190618863\|gb\|EDV34387.1\| GF21290... gi\|220952120 - gi\|220952120\|gb\|ACL88603.1\| RpS14a-PA [synthetic construct] FBpp0311458, RpS... - The gene Ribosomal protein S14a is referred to in FlyBase by the symbol Dmel\RpS14a (CG1524, FBgn000...	175.0	[0..1]	[142..1]
RS14_PODCA - 40S ribosomal protein S14 OS=Podocoryna carnea GN=RPS14 PE=2 SV=1	175.0	[0..1]	[142..1]

Back

Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKKAAKGD EAPKEVVSLG PTVREGEHVF GVAHIFASFN DTFVHVTDLS GRETISRVTG  60
   61 GMKVKADRDE SSPYAAMLAA QDVAQKCKEL GITALHIKLR ATGGNRTKTP GPGAQSALRA 120
  121 LARAGMKIGR IEDVTPIPTD STRRKGGRRG RRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1s1hK
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits