YRC Public Data Repository - Protein Structure Prediction

Protein:	RODA_ECOLI
Organism:	Escherichia coli
Length:	370 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RODA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|127513864, gi... - gi\|78368752\|ref\|ZP_00838959.1\| Cell cycle protein [Shewanella sp. PV-4], gi\|78359193\|gb\|EAP01069.1\| ...	356.0	[0..1]	[368..1]
gi\|120597863, gi... - gi\|82743364\|ref\|ZP_00906014.1\| Rod shape-determining protein RodA [Shewanella sp. W3-18-1], gi\|82719... gi\|145565654, gi... - gi\|146293964\|ref\|YP_001184388.1\| rod shape-determining protein RodA [Shewanella putrefaciens CN-32],... gi\|124546228, gi... - gi\|124546228\|ref\|ZP_01705333.1\| rod shape-determining protein RodA [Shewanella putrefaciens 200], gi...	354.0	[0..1]	[368..1]
SO1167 - rod shape-determining protein RodA gi\|24346821, gi\|... - gi\|24372750\|ref\|NP_716792.1\| rod shape-determining protein RodA [Shewanella oneidensis MR-1], gi\|243...	353.0	[0..6]	[368..10]
gi\|113969334, gi... - gi\|82498653\|ref\|ZP_00884129.1\| Rod shape-determining protein RodA [Shewanella sp. MR-4], gi\|82403349... gi\|78692433, gi\|... - gi\|78692433\|ref\|ZP_00856958.1\| Rod shape-determining protein RodA [Shewanella sp. MR-7], gi\|78508162...	352.0	[0..6]	[368..5]
gi\|68548514, gi\|... - gi\|68548514\|ref\|ZP_00588010.1\| Cell cycle protein [Shewanella amazonensis SB2B], gi\|68513778\|gb\|EAN3...	352.0	[0..1]	[368..1]
gi\|113908203, gi... - gi\|160876560\|ref\|YP_001555876.1\| rod shape-determining protein RodA [Shewanella baltica OS195], gi\|1...	351.0	[0..1]	[368..1]
gi\|69164291, gi\|... - gi\|69952285\|ref\|ZP_00639798.1\| Cell cycle protein [Shewanella frigidimarina NCIMB 400], gi\|69164291\|...	350.0	[0..7]	[368..12]
gi\|109897880, gi... - gi\|76794972\|ref\|ZP_00777421.1\| Rod shape-determining protein RodA [Pseudoalteromonas atlantica T6c],...	346.0	[0..5]	[368..11]
gi\|91792214, gi\|... - gi\|91792214\|ref\|YP_561865.1\| rod shape-determining protein RodA [Shewanella denitrificans OS217], gi...	344.0	[0..1]	[368..1]
gi\|75830689, gi\|... - gi\|75830689\|ref\|ZP_00759962.1\| COG0772: Bacterial cell division membrane protein [Vibrio cholerae MO... gi\|75826262, gi\|... - gi\|75826262\|ref\|ZP_00755697.1\| COG0772: Bacterial cell division membrane protein [Vibrio cholerae O3... gi\|75816439, gi\|... - gi\|75816439\|ref\|ZP_00746909.1\| COG0772: Bacterial cell division membrane protein [Vibrio cholerae V5... gi\|124115687, gi... - gi\|153213853\|ref\|ZP_01949059.1\| rod shape-determining protein RodA [Vibrio cholerae 1587], gi\|124115... gi\|153225549, gi... - gi\|153225549\|ref\|ZP_01954773.1\| rod shape-determining protein RodA [Vibrio cholerae MAK 757], gi\|124... gi\|229510880, gi... - gi\|229510880\|ref\|ZP_04400359.1\| rod shape-determining protein RodA [Vibrio cholerae B33], gi\|2293508... gi\|15640965, gi\|... - gi\|9655408\|gb\|AAF94111.1\| rod shape-determining protein RodA [Vibrio cholerae O1 biovar El Tor str. ... gi\|11278146 - pir\|\|H82259 rod shape-determining protein RodA VC0949 [imported] - Vibrio cholerae (strain N16961 se... gi\|227009011, gi... - gi\|227081123\|ref\|YP_002809674.1\| rod shape-determining protein RodA [Vibrio cholerae M66-2], gi\|2270... gi\|229505450, gi... - gi\|229505450\|ref\|ZP_04394960.1\| rod shape-determining protein RodA [Vibrio cholerae BX 330286], gi\|2... gi\|229512957, gi... - gi\|229512957\|ref\|ZP_04402423.1\| rod shape-determining protein RodA [Vibrio cholerae TMA 21], gi\|2293... gi\|229518001, gi... - gi\|229518001\|ref\|ZP_04407445.1\| rod shape-determining protein RodA [Vibrio cholerae RC9], gi\|2293447... gi\|153830929, gi... - gi\|153830929\|ref\|ZP_01983596.1\| rod shape-determining protein RodA [Vibrio cholerae 623-39], gi\|1488... gi\|229523258, gi... - gi\|229523258\|ref\|ZP_04412665.1\| rod shape-determining protein RodA [Vibrio cholerae TM 11079-80], gi... gi\|229529954, gi... - gi\|229529954\|ref\|ZP_04419344.1\| rod shape-determining protein RodA [Vibrio cholerae 12129(1)], gi\|22... gi\|229608469, gi... - gi\|229608469\|ref\|YP_002879117.1\| rod shape-determining protein RodA [Vibrio cholerae MJ-1236], gi\|22...	343.0	[0..2]	[370..5]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDNPNKKTF WDKVHLDPTM LLILLALLVY SALVIWSASG QDIGMMERKI GQIAMGLVIM  60
   61 VVMAQIPPRV YEGWAPYLYI ICIILLVAVD AFGAISKGAQ RWLDLGIVRF QPSEIAKIAV 120
  121 PLMVARFINR DVCPPSLKNT GIALVLIFMP TLLVAAQPDL GTSILVALSG LFVLFLSGL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [180-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWRLIGVAVV LVAAFIPILW FFLMHDYQRQ RVMMLLDPES DPLGAGYHII QSKIAIGSGG  60
   61 LRGKGWLHGT QSQLEFLPER HTDFIFAVLA EELGLVGILI LLALYILLIM RGLWIAARA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [299-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTTFGRVMAG GLMLILFVYV FVNIGMVSGI LPVVGVPLPL VSYGGSALIV LMAGFGIVMS  60
   61 IHTHRKMLSK SV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits