YRC Public Data Repository - Protein Structure Prediction

Protein:	RNK_ECOLI
Organism:	Escherichia coli
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|109456692, gi... - gi\|110680576\|ref\|YP_683583.1\| transcription elongation factor GreA [Roseobacter denitrificans OCh 11...	168.0	[0..1]	[126..180]
gi\|46156715 - gi\|46156715\|ref\|ZP_00132245.2\| COG0782: Transcription elongation factor [Haemophilus somnus 2336]	165.0	[0..1]	[127..34]
gi\|56179097, gi\|... - gi\|56460087\|ref\|YP_155368.1\| transcription elongation factor GreA [Idiomarina loihiensis L2TR], gi\|5...	162.0	[0..1]	[127..24]
GREA_HELHP - Transcription elongation factor GreA OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=greA PE=... GREA_HELHP - Transcription elongation factor greA OS=Helicobacter hepaticus GN=greA PE=3 SV=1	161.0	[0..1]	[127..24]
gi\|23467072, gi\|... - gi\|23467072\|ref\|ZP_00122657.1\| COG0782: Transcription elongation factor [Haemophilus somnus 129PT], ... gi\|170717727, gi... - gi\|170717727\|ref\|YP_001784798.1\| transcription elongation factor GreA [Haemophilus somnus 2336], gi\|...	161.0	[0..1]	[127..24]
GREA_ACICJ - Transcription elongation factor GreA OS=Acidiphilium cryptum (strain JF-5) GN=greA PE=3 SV=1	160.0	[0..2]	[126..25]
GREA_RHIME - Transcription elongation factor GreA OS=Rhizobium meliloti (strain 1021) GN=greA PE=3 SV=1 GREA_SINMW - Transcription elongation factor GreA OS=Sinorhizobium medicae (strain WSM419) GN=greA PE=3 SV=1 GREA_RHIME - Transcription elongation factor greA OS=Rhizobium meliloti GN=greA PE=3 SV=1	160.0	[0..2]	[126..26]
GREA_ALKEH - Transcription elongation factor GreA OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 ...	159.0	[0..1]	[126..24]
gi\|47716785 - gi\|47716785\|gb\|AAT37570.1\| GreA [Sinorhizobium meliloti]	159.0	[0..2]	[126..31]
gi\|83852886, gi\|... - gi\|83859439\|ref\|ZP_00952960.1\| transcription elongation factor GreA [Oceanicaulis alexandrii HTCC263...	159.0	[0..1]	[127..19]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPTIIIND LDAERIDILL EQPAYAGLPI ADALNAELDR AQMCSPEEMP HDVVTMNSRV  60
   61 KFRNLSDGEV RVRTLVYPAK MTDSNTQLSV MAPVGAALLG LRVGDSIHWE LPGGVATHLE 120
  121 VLELEYQPEA AGDYLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	2pn0A
Description:	No description for 2pn0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits