YRC Public Data Repository - Protein Structure Prediction

Protein:	RNI_ECOLI
Organism:	Escherichia coli
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|227838495, gi... - gi\|227884409\|ref\|ZP_04002214.1\| ribonuclease I [Escherichia coli 83972], gi\|227838495\|gb\|EEJ48961.1\|... gi\|75514705, gi\|... - gi\|75514705\|ref\|ZP_00736960.1\| COG3719: Ribonuclease I [Escherichia coli 53638], gi\|188493619\|ref\|ZP... gi\|218425999, gi... - gi\|218688435\|ref\|YP_002396647.1\| ribonuclease I [Escherichia coli ED1a], gi\|218425999\|emb\|CAR06816.1...	213.0	[0..1]	[268..1]
gi\|75236593 - gi\|75236593\|ref\|ZP_00720681.1\| COG3719: Ribonuclease I [Escherichia coli E110019]	213.0	[0..1]	[268..7]
gi\|23306696 - gi\|23306696\|gb\|AAN15266.1\| ribonuclease M [Escherichia coli]	213.0	[0..1]	[268..1]
gi\|26106990, gi\|... - gi\|26246591\|ref\|NP_752630.1\| ribonuclease I [Escherichia coli CFT073], gi\|26106990\|gb\|AAN79174.1\|AE0...	213.0	[0..1]	[268..7]
gi\|74311146, gi\|... - gi\|74311146\|ref\|YP_309565.1\| ribonuclease I [Shigella sonnei Ss046], gi\|73854623\|gb\|AAZ87330.1\| RNas...	213.0	[0..1]	[268..1]
gi\|193063328, gi... - gi\|75258652\|ref\|ZP_00730059.1\| COG3719: Ribonuclease I [Escherichia coli E22], gi\|193063328\|ref\|ZP_0... gi\|191167379, gi... - gi\|75229504\|ref\|ZP_00716051.1\| COG3719: Ribonuclease I [Escherichia coli B7A], gi\|191167379\|ref\|ZP_0...	213.0	[0..1]	[268..1]
gi\|15829904, gi\|... - gi\|15829904\|ref\|NP_308677.1\| RNase I [Escherichia coli O157:H7], gi\|13360108\|dbj\|BAB34073.1\| RNase I... gi\|209777346, gi... - pir\|\|B90710 RNase I [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952), gi\|20977... gi\|209397324, gi... - gi\|209397324\|ref\|YP_002269247.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4115], gi\|209158724... gi\|217324208, gi... - gi\|217324208\|ref\|ZP_03440292.1\| ribonuclease I [Escherichia coli O157:H7 str. TW14588], gi\|217320429... gi\|15829904, gi\|... - gi\|15829904\|ref\|NP_308677.1\| ribonuclease I [Escherichia coli O157:H7 str. Sakai], gi\|13360108\|dbj\|B... gi\|195936161 - gi\|195936161\|ref\|ZP_03081543.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4024] gi\|208725582, gi... - gi\|208805781\|ref\|ZP_03248118.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4206], gi\|208725582\|... gi\|208815562, gi... - gi\|208815562\|ref\|ZP_03256741.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4045], gi\|208732210\|... gi\|208822838, gi... - gi\|208822838\|ref\|ZP_03263156.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4042], gi\|208737031\|... gi\|168774675, gi... - gi\|187769778\|gb\|EDU33622.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4196], gi\|168774675\|ref\|... gi\|168779102, gi... - gi\|189002747\|gb\|EDU71733.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4076], gi\|168779102\|ref\|... gi\|168786459, gi... - gi\|189373535\|gb\|EDU91951.1\| ribonuclease I [Escherichia coli O157:H7 str. EC869], gi\|168786459\|ref\|Z... gi\|189379386, gi... - gi\|189379386\|gb\|EDU97802.1\| ribonuclease I [Escherichia coli O157:H7 str. EC508], gi\|168798172\|ref\|Z... gi\|168747718, gi... - gi\|188017657\|gb\|EDU55779.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4113], gi\|168747718\|ref\|... gi\|168754713, gi... - gi\|189358022\|gb\|EDU76441.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4401], gi\|168754713\|ref\|... gi\|189369103, gi... - gi\|189369103\|gb\|EDU87519.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4501], gi\|168760239\|ref\|... gi\|168770215, gi... - gi\|189360837\|gb\|EDU79256.1\| ribonuclease I [Escherichia coli O157:H7 str. EC4486], gi\|168770215\|ref\|... gi\|254591178, gi... - gi\|254791778\|ref\|YP_003076615.1\| ribonuclease I [Escherichia coli O157:H7 str. TW14359], gi\|25459117...	213.0	[0..1]	[268..1]
gi\|15800326, gi\|... - gi\|15800326\|ref\|NP_286338.1\| ribonuclease I [Escherichia coli O157:H7 EDL933], gi\|12513510\|gb\|AAG549... gi\|25289281 - pir\|\|F85560 hypothetical protein rna [imported] - Escherichia coli (strain O157:H7, substrain EDL93...	212.0	[0..1]	[268..1]
gi\|75177474, gi\|... - gi\|75177474\|ref\|ZP_00697555.1\| COG3719: Ribonuclease I [Shigella boydii BS512], gi\|187731120\|ref\|YP_...	212.0	[0..1]	[268..1]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAFWRNAAL LAVSLLPFSS ANALALQAKQ YGDFDRYVLA LSWQTGFCQS QHDRNRNERD  60
   61 ECRLQTETTN KADFLTVHGL WPGLPKSVAA RGVDERRWMR FGCATRPIPN LPEARASRMC 120
  121 SSPETGLSLE TAAKLSEVMP GAGGRSCLER YEYAKHGACF GFDPDAYFGT MVRLNQEIKE 180
  181 SEAGKFLADN YGKTVSRRDF DAAFAKSWGK ENVKAVKLTC QGNPAYLTEI QISIKADAIN 240
  241 APLSANSFLP QPHPGNCGKT FVIDKAGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	2pqxA
Description:	No description for 2pqxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits