YRC Public Data Repository - Protein Structure Prediction

Protein:	RNFB_ECOLI
Organism:	Escherichia coli
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNFB_ECOLI.

Description	E-value	Query Range	Subject Range
RSXB_ECOL6 - Electron transport complex subunit RsxB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... RNFB_ECOL6 - Electron transport complex protein rnfB OS=Escherichia coli O6 GN=rnfB PE=3 SV=1 gi\|227885956, gi... - gi\|227885956\|ref\|ZP_04003761.1\| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972], gi\|2278370...	169.0	[0..1]	[192..1]
RSXB_ECOUT - Electron transport complex subunit RsxB OS=Escherichia coli (strain UTI89 / UPEC) GN=rsxB PE=3 SV=1 RSXB_ECO57 - Electron transport complex subunit RsxB OS=Escherichia coli O157:H7 GN=rsxB PE=3 SV=1 gi\|194415943, gi... - gi\|75212965\|ref\|ZP_00712963.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... gi\|208740661, gi... - gi\|208820538\|ref\|ZP_03260858.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... gi\|190904047, gi... - gi\|75230923\|ref\|ZP_00717372.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... RSXB_ECO5E - Electron transport complex subunit RsxB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rsxB P... RSXB_ECOSE - Electron transport complex subunit RsxB OS=Escherichia coli (strain SE11) GN=rsxB PE=3 SV=1 RSXB_ECO24 - Electron transport complex subunit RsxB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rsxB... gi\|217328786, gi... - gi\|217328786\|ref\|ZP_03444867.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... RSXB_SHISS - Electron transport complex subunit RsxB OS=Shigella sonnei (strain Ss046) GN=rsxB PE=3 SV=1 gi\|15831591, gi\|... - gi\|15831591\|ref\|NP_310364.1\| electron transport complex protein RnfB [Escherichia coli O157:H7 str. ... RSXB_ECO45 - Electron transport complex subunit RsxB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rsxB PE=3... RSXB_ECO55 - Electron transport complex subunit RsxB OS=Escherichia coli (strain 55989 / EAEC) GN=rsxB PE=3 SV=1 gi\|75238811, gi\|... - gi\|75238811\|ref\|ZP_00722795.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... RSXB_ECO7I - Electron transport complex subunit RsxB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rsxB PE=... gi\|193064973, gi... - gi\|75257047\|ref\|ZP_00728607.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... gi\|254592645, gi... - gi\|254793245\|ref\|YP_003078082.1\| inner membrane iron-sulfur protein in SoxR-reducing complex [Escher... gi\|226900328, gi... - gi\|237705571\|ref\|ZP_04536052.1\| electron transport complex protein rnfB [Escherichia sp. 3_2_53FAA],... gi\|209769658, gi... - pir\|\|A99921 Electron transport complex protein rnfB - Escherichia coli (strain O157:H7, substrain R... RSXB_ECOK1 - Electron transport complex subunit RsxB OS=Escherichia coli O1:K1 / APEC GN=rsxB PE=3 SV=1 gi\|187768706, gi... - gi\|187768706\|gb\|EDU32550.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|188999203, gi... - gi\|188999203\|gb\|EDU68189.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|189370933, gi... - gi\|189370933\|gb\|EDU89349.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|168800888, gi... - gi\|189376873\|gb\|EDU95289.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... RSXB_ECOSM - Electron transport complex subunit RsxB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rsxB PE=3 SV... gi\|195939017 - gi\|195939017\|ref\|ZP_03084399.1\| electron transport complex protein RnfB [Escherichia coli O157:H7 st... gi\|208725066, gi... - gi\|208810550\|ref\|ZP_03252426.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... gi\|208731121, gi... - gi\|208816778\|ref\|ZP_03257898.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... gi\|168750558, gi... - gi\|188015258\|gb\|EDU53380.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|189355528, gi... - gi\|189355528\|gb\|EDU73947.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|189366182, gi... - gi\|189366182\|gb\|EDU84598.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ... gi\|189359994, gi... - gi\|189359994\|gb\|EDU78413.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ...	169.0	[0..1]	[192..1]
RSXB_SHIFL - Electron transport complex subunit RsxB OS=Shigella flexneri GN=rsxB PE=3 SV=1 gi\|24051982, gi\|... - gi\|24113018\|ref\|NP_707528.1\| electron transport complex protein RnfB [Shigella flexneri 2a str. 301]... RSXB_SHIBS - Electron transport complex subunit RsxB OS=Shigella boydii serotype 4 (strain Sb227) GN=rsxB PE=3 SV... gi\|30063143, gi\|... - gi\|30063143\|ref\|NP_837314.1\| electron transport complex protein RnfB [Shigella flexneri 2a str. 2457...	168.0	[0..1]	[192..1]
gi\|25316768 - gi\|25316768\|pir\|\|E85769 hypothetical protein Z2634 [imported] - Escherichia coli (strain O157:H7, s... gi\|12515617, gi\|... - gi\|15802042\|ref\|NP_288064.1\| electron transport complex protein RnfB [Escherichia coli O157:H7 EDL93...	167.0	[0..1]	[192..1]
RSXB_SHIDS - Electron transport complex subunit RsxB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rsxB PE...	167.0	[0..1]	[192..1]
RSXB_ECOL5 - Electron transport complex subunit RsxB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rsxB P...	167.0	[0..1]	[192..1]
RSXB_SHIB3 - Electron transport complex subunit RsxB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) ...	167.0	[0..1]	[192..1]
gi\|110805601, gi... - gi\|110805601\|ref\|YP_689121.1\| electron transport complex protein RnfB [Shigella flexneri 5 str. 8401...	165.0	[0..1]	[192..1]
gi\|188490538, gi... - gi\|75512939\|ref\|ZP_00735420.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch...	163.0	[0..1]	[184..1]
gi\|36785710, gi\|... - gi\|37526279\|ref\|NP_929623.1\| electron transport complex protein RnfB [Photorhabdus luminescens subsp...	163.0	[0..1]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAIWIAVAA VSLLGLAFGA ILGYASRRFA VEDDPVVEKI DEILPQSQCG QCGYPGCRPY  60
   61 AEAISCNGEK INRCAPGGEA VMLKIAELLN VEPQPLDGEA QEITPARMVA VIDENNCIGC 120
  121 TKCIQACPVD AIVGATRAMH TVMSDLCTGC NLCVDPCPTH CISLQPVAET PDSWKWDLNT 180
  181 IPVRIIPVEH HA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	1b0pA
Description:	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I; Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI; Pyruvate-ferredoxin oxidoreductase, PFOR, domain II; Pyruvate-ferredoxin oxidoreductase, PFOR, domain III; Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits