YRC Public Data Repository - Protein Structure Prediction

Protein:	RLPA_ECOLI
Organism:	Escherichia coli
Length:	362 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75175901, gi\|... - gi\|75175901\|ref\|ZP_00696088.1\| COG0797: Lipoproteins [Shigella boydii BS512], gi\|187730890\|ref\|YP_00...	241.0	[0..1]	[362..1]
gi\|77957577 - gi\|77957577\|ref\|ZP_00821629.1\| COG0797: Lipoproteins [Yersinia bercovieri ATCC 43970]	241.0	[0..1]	[361..1]
gi\|238729254, gi... - gi\|77979031\|ref\|ZP_00834453.1\| COG0797: Lipoproteins [Yersinia intermedia ATCC 29909], gi\|238791638\|...	241.0	[0..1]	[361..1]
gi\|82543079, gi\|... - gi\|82543079\|ref\|YP_407026.1\| rare lipoprotein A [Shigella boydii Sb227], gi\|81244490\|gb\|ABB65198.1\| ...	240.0	[0..1]	[362..1]
gi\|188495794, gi... - gi\|188495794\|ref\|ZP_03003064.1\| rare lipoprotein A [Escherichia coli 53638], gi\|188490993\|gb\|EDU6609... gi\|209917892, gi... - gi\|209917892\|ref\|YP_002291976.1\| rare lipoprotein A [Escherichia coli SE11], gi\|209911151\|dbj\|BAG762... gi\|170683228, gi... - gi\|170683228\|ref\|YP_001742749.1\| rare lipoprotein A [Escherichia coli SMS-3-5], gi\|170520946\|gb\|ACB1... gi\|193069022, gi... - gi\|75236614\|ref\|ZP_00720702.1\| COG0797: Lipoproteins [Escherichia coli E110019], gi\|193069022\|ref\|ZP... gi\|218431064, gi... - gi\|218703967\|ref\|YP_002411486.1\| rare lipoprotein A [Escherichia coli UMN026], gi\|218431064\|emb\|CAR1... gi\|75207885, gi\|... - gi\|75207885\|ref\|ZP_00708348.1\| COG0797: Lipoproteins [Escherichia coli B171], gi\|194430717\|ref\|ZP_03... gi\|157160128, gi... - gi\|75194816\|ref\|ZP_00704886.1\| COG0797: Lipoproteins [Escherichia coli HS], gi\|157160128\|ref\|YP_0014... gi\|218694073, gi... - gi\|218694073\|ref\|YP_002401740.1\| rare lipoprotein A [Escherichia coli 55989], gi\|218350805\|emb\|CAU96... gi\|75189671, gi\|... - gi\|75189671\|ref\|ZP_00702938.1\| COG0797: Lipoproteins [Escherichia coli E24377A], gi\|157158068\|ref\|YP... gi\|218368991, gi... - gi\|218699005\|ref\|YP_002406634.1\| rare lipoprotein A [Escherichia coli IAI39], gi\|218368991\|emb\|CAR16... gi\|74311169, gi\|... - gi\|74311169\|ref\|YP_309588.1\| rare lipoprotein A [Shigella sonnei Ss046], gi\|73854646\|gb\|AAZ87353.1\| ... gi\|193063389, gi... - gi\|75258631\|ref\|ZP_00730038.1\| COG0797: Lipoproteins [Escherichia coli E22], gi\|193063389\|ref\|ZP_030... gi\|253774381, gi... - gi\|254287503\|ref\|YP_003053251.1\| minor lipoprotein [Escherichia coli BL21(DE3)], gi\|253976810\|gb\|ACT... gi\|242376409, gi... - gi\|251784136\|ref\|YP_002998440.1\| hypothetical protein B21_00591 [Escherichia coli BL21], gi\|24237640... gi\|254160715, gi... - gi\|254160715\|ref\|YP_003043823.1\| minor lipoprotein [Escherichia coli B str. REL606], gi\|253972616\|gb...	240.0	[0..1]	[362..1]
gi\|145599914, gi... - gi\|145599914\|ref\|YP_001163990.1\| rare lipoprotein A [Yersinia pestis Pestoides F], gi\|145211610\|gb\|A... RLPA_YERPE - Rare lipoprotein A OS=Yersinia pestis GN=rlpA PE=3 SV=1 gi\|229694514, gi... - gi\|229838148\|ref\|ZP_04458307.1\| minor lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229688289, gi... - gi\|229898741\|ref\|ZP_04513886.1\| minor lipoprotein [Yersinia pestis biovar Orientalis str. India 195]... Q66DF1\|Q66DF1_YERPS - Rare lipoprotein A - Yersinia pseudotuberculosis gi\|45435800, gi\|... - gi\|45440941\|ref\|NP_992480.1\| rare lipoprotein A [Yersinia pestis biovar Microtus str. 91001], gi\|454... gi\|117674460, gi... - gi\|77632044\|ref\|ZP_00794630.1\| COG0797: Lipoproteins [Yersinia pseudotuberculosis IP 31758], gi\|1539... gi\|21957933, gi\|... - gi\|22125079\|ref\|NP_668502.1\| rare lipoprotein A [Yersinia pestis KIM], gi\|21957933\|gb\|AAM84753.1\|AE0... gi\|16122815, gi\|... - gi\|218929683\|ref\|YP_002347558.1\| rare lipoprotein A [Yersinia pestis CO92], gi\|16122815\|ref\|NP_40612... gi\|51595442, gi\|... - gi\|51595442\|ref\|YP_069633.1\| rare lipoprotein A [Yersinia pseudotuberculosis IP 32953], gi\|51588724\|... gi\|165914494, gi... - gi\|89101630\|ref\|ZP_01174349.1\| COG0797: Lipoproteins [Yersinia pestis biovar Orientalis str. IP275],... gi\|108774899, gi... - gi\|229901488\|ref\|ZP_04516610.1\| minor lipoprotein [Yersinia pestis Nepal516], gi\|229681417\|gb\|EEO775... gi\|149365497, gi... - gi\|149365497\|ref\|ZP_01887532.1\| rare lipoprotein A precursor [Yersinia pestis CA88-4125], gi\|1492919... gi\|165992933, gi... - gi\|166008551\|ref\|ZP_02229449.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|165925392, gi... - gi\|165925392\|ref\|ZP_02221224.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|166958585, gi... - gi\|167422571\|ref\|ZP_02314324.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|166212380, gi... - gi\|166212380\|ref\|ZP_02238415.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|167468425 - gi\|167468425\|ref\|ZP_02333129.1\| rare lipoprotein A [Yersinia pestis FV-1] gi\|167423683, gi... - gi\|167423683\|ref\|ZP_02315436.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer...	240.0	[0..1]	[361..1]
gi\|110614266, gi... - gi\|110804718\|ref\|YP_688238.1\| rare lipoprotein A [Shigella flexneri 5 str. 8401], gi\|110614266\|gb\|AB... gi\|30062178, gi\|... - gi\|30062178\|ref\|NP_836349.1\| rare lipoprotein A [Shigella flexneri 2a str. 2457T], gi\|30040423\|gb\|AA... gi\|24050893, gi\|... - gi\|24112067\|ref\|NP_706577.1\| rare lipoprotein A [Shigella flexneri 2a str. 301], gi\|24050893\|gb\|AAN4...	240.0	[0..1]	[362..1]
gi\|110640862, gi... - gi\|110640862\|ref\|YP_668590.1\| rare lipoprotein A [Escherichia coli 536], gi\|110342454\|gb\|ABG68691.1\|... gi\|26107013, gi\|... - gi\|26246614\|ref\|NP_752654.1\| rare lipoprotein A [Escherichia coli CFT073], gi\|26107013\|gb\|AAN79197.1... gi\|218426020, gi... - gi\|218688456\|ref\|YP_002396668.1\| rare lipoprotein A [Escherichia coli ED1a], gi\|218426020\|emb\|CAR068... gi\|191172273, gi... - gi\|75240787\|ref\|ZP_00724694.1\| COG0797: Lipoproteins [Escherichia coli F11], gi\|191172273\|ref\|ZP_030... gi\|227838473, gi... - gi\|227884387\|ref\|ZP_04002192.1\| rare lipoprotein A [Escherichia coli 83972], gi\|227838473\|gb\|EEJ4893...	240.0	[0..1]	[362..1]
gi\|218557571, gi... - gi\|218557571\|ref\|YP_002390484.1\| rare lipoprotein A [Escherichia coli S88], gi\|218364340\|emb\|CAR0201... gi\|226898603, gi... - gi\|237707393\|ref\|ZP_04537874.1\| rare lipoprotein A [Escherichia sp. 3_2_53FAA], gi\|226898603\|gb\|EEH8... gi\|91209680, gi\|... - gi\|91209680\|ref\|YP_539666.1\| rare lipoprotein A [Escherichia coli UTI89], gi\|91071254\|gb\|ABE06135.1\|...	240.0	[0..1]	[362..1]
gi\|190902599, gi... - gi\|75229483\|ref\|ZP_00716030.1\| COG0797: Lipoproteins [Escherichia coli B7A], gi\|191167350\|ref\|ZP_030... gi\|218553175, gi... - gi\|218553175\|ref\|YP_002386088.1\| rare lipoprotein A [Escherichia coli IAI1], gi\|218359943\|emb\|CAQ974...	239.0	[0..1]	[362..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKQWLGICI AAGMLAACTS DDGQQQTVSV PQPAVCNGPI VEISGADPRF EPLNATANQD  60
   61 YQRDGKSYKI VQDPSRFSQA GLAAIYDAEP GSNLTASGEA FDPTQLTAAH PTLPIPSYAR 120
  121 ITNLANGRMI VVRINDRGPY GNDRVISLSR AAADRLNTSN NTKVRIDPII VAQDGSLSGP 180
  181 G

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.72
Match:	2bh0A
Description:	No description for 2bh0A was found.

Predicted Domain #2

Region A:
Residues: [182-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACTTVAKQT YALPAPPDLS GGAGTSSVSG PQGDILPVSN STLKSEDPTG APVTSSGFLG  60
   61 APTTLAPGVL EG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [254-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEPTPAPQPV VTAPSTTPAT SPAMVTPQAV SQSASGNFMV QVGAVSDQAR AQQYQQQLGQ  60
   61 KFGVPGRVTQ NGAVWRIQLG PFASKAEAST LQQRLQTEAQ LQSFITTAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.39794
Match:	1utaA
Description:	Solution structure of the C-terminal RNP domain from the divisome protein FtsN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits