YRC Public Data Repository - Protein Structure Prediction

Protein:	RL36_ECOLI
Organism:	Escherichia coli
Length:	38 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL36_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|30687686, gi\|... - gi\|30687686\|ref\|NP_850857.1\| ribosomal protein L36 family protein [Arabidopsis thaliana], gi\|2224240...	7.0E-12	[1..38]	[1..38]
gi\|134116879, gi... - gi\|50255284\|gb\|EAL18019.1\| hypothetical protein CNBK0400 [Cryptococcus neoformans var. neoformans B-... gi\|58260982, gi\|... - gi\|58260982\|ref\|XP_567901.1\| 50s ribosomal protein l36 [Cryptococcus neoformans var. neoformans JEC2...	8.0E-9	[1..38]	[70..107]
MRPL36 - mitochondrial ribosomal protein L36 ENSPTRT00000031035 - null	8.0E-9	[2..37]	[67..102]
orf19.8380, orf1... - orf19.760 CGDID:CAL0001889 Assembly 19, Contig19-10073 (26337, 26708) CDS, translated using codon ta... gi\|68484933, gi\|... - gi\|68485008\|ref\|XP_713570.1\| likely mitochondrial ribosomal protein L36 [Candida albicans SC5314], g...	9.0E-9	[2..38]	[87..123]
gi\|76673281 - gi\|76673281\|ref\|XP_580819.2\| PREDICTED: similar to rCG41937 [Bos taurus]	1.0E-8	[2..37]	[112..147]
RTC6 - Homolog of the prokaryotic ribosomal protein L36, likely to be a mitochondrial ribosomal protein cod... RTC6_YEAST - 54S ribosomal protein RTC6, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	2.0E-8	[2..38]	[57..93]
gi\|49652153, gi\|... - gi\|50405701\|ref\|XP_456489.1\| hypothetical protein DEHA0A03817g [Debaryomyces hansenii CBS767], gi\|49...	3.0E-8	[2..38]	[47..83]
gi\|116000253 - gi\|116000253\|emb\|CAL49933.1\| Mitochondrial/chloroplast ribosomal protein L36 (ISS) [Ostreococcus tau...	4.0E-8	[1..38]	[1..38]
RM36_DANRE - 39S ribosomal protein L36, mitochondrial OS=Danio rerio GN=mrpl36 PE=3 SV=1	5.0E-8	[1..38]	[79..116]

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Predicted Domain #1

Region A:
Residues: [1-38]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVRASVKKL CRNCKIVKRD GVIRVICSAE PKHKQRQG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits