YRC Public Data Repository - Protein Structure Prediction

Protein:	RL23_ECOLI
Organism:	Escherichia coli
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL23_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46561796 - gi\|46561796\|gb\|AAT01117.1\| rpL23-ScFv fusion protein [rpL23-fusion expression vector pScFV]	148.0	[0..1]	[100..1]
gi\|46561792 - gi\|46561792\|gb\|AAT01114.1\| rpL23-SA fusion protein [rpL23-fusion expression vector pSA]	142.0	[0..1]	[100..1]
gi\|76613395 - gi\|76613395\|ref\|XP_871507.1\| PREDICTED: similar to 60S ribosomal protein L23a [Bos taurus]	136.0	[0..3]	[92..279]
gi\|46561784 - gi\|46561784\|gb\|AAT01108.1\| rpL23-GFP fusion protein [rpL23-fusion expression vector pGFP]	136.0	[0..1]	[100..1]
gi\|46561780 - gi\|46561780\|gb\|AAT01105.1\| rpL23-mIL-6 fusion protein [rpL23-fusion expression vector pmIL-6]	135.0	[0..1]	[100..1]
gi\|46561776 - gi\|46561776\|gb\|AAT01102.1\| rpL23-yEF1A fusion protein [rpL23-fusion expression vector pyEF1A]	135.0	[0..1]	[100..1]
RL23_HALHL - 50S ribosomal protein L23 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplW PE=3 SV=1	132.0	[0..2]	[98..1]
SO0233 - ribosomal protein L23 gi\|24371831, gi\|... - gi\|24371831\|ref\|NP_715873.1\| 50S ribosomal protein L23 [Shewanella oneidensis MR-1], gi\|24345644\|gb\|...	128.0	[0..1]	[100..2]
gi\|114045709, gi... - gi\|114045709\|ref\|YP_736259.1\| 50S ribosomal protein L23 [Shewanella sp. MR-7], gi\|113887151\|gb\|ABI41... gi\|82403607, gi\|... - gi\|82498386\|ref\|ZP_00883886.1\| 50S ribosomal protein L23 [Shewanella sp. MR-4], gi\|82403607\|gb\|EAP44...	128.0	[0..1]	[100..2]
gi\|145566529, gi... - gi\|77816850\|ref\|ZP_00815987.1\| Ribosomal L23 protein [Shewanella putrefaciens CN-32], gi\|77808201\|gb... gi\|124507461, gi... - gi\|124550495\|ref\|ZP_01708049.1\| Ribosomal protein L25/L23 [Shewanella putrefaciens 200], gi\|12450746... gi\|125999558, gi... - gi\|126176353\|ref\|YP_001052502.1\| ribosomal protein L25/L23 [Shewanella baltica OS155], gi\|125999558\|... gi\|120596991, gi... - gi\|82744376\|ref\|ZP_00906938.1\| 50S ribosomal protein L23 [Shewanella sp. W3-18-1], gi\|82718273\|gb\|EA... gi\|151363369, gi... - gi\|152998751\|ref\|YP_001364432.1\| 50S ribosomal protein L23 [Shewanella baltica OS185], gi\|151363369\|... gi\|217975199, gi... - gi\|217975199\|ref\|YP_002359950.1\| 50S ribosomal protein L23 [Shewanella baltica OS223], gi\|217500334\|... gi\|160858850, gi... - gi\|160873328\|ref\|YP_001552644.1\| 50S ribosomal protein L23 [Shewanella baltica OS195], gi\|160858850\|...	128.0	[0..1]	[100..2]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIREERLLKV LRAPHVSEKA STAMEKSNTI VLKVAKDATK AEIKAAVQKL FEVEVEVVNT  60
   61 LVVKGKVKRH GQRIGRRSDW KKAYVTLKEG QNLDFVGGAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	1p85R
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.53227268665795	bayes_pls_golite062009
structural molecule activity	3.24319212599242	bayes_pls_golite062009
nucleic acid binding	0.0217942967105049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: