YRC Public Data Repository - Protein Structure Prediction

Protein:	RL16_ECOLI
Organism:	Escherichia coli
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL16_ECOLI.

Description	E-value	Query Range	Subject Range
RL16_THETN - 50S ribosomal protein L16 OS=Thermoanaerobacter tengcongensis GN=rplP PE=3 SV=1 RL16_CALS4 - 50S ribosomal protein L16 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / ...	180.0	[0..1]	[136..1]
RL16_PROM4 - 50S ribosomal protein L16 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplP PE=3 SV=1	179.0	[0..1]	[131..1]
RL16_SYNJA - 50S ribosomal protein L16 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplP PE=3 SV=1 gi\|86605859 - gi\|86605859\|ref\|YP_474622.1\| ribosomal protein L16 [Cyanobacteria bacterium Yellowstone A-Prime]	179.0	[0..1]	[133..1]
RL16_SYNJB - 50S ribosomal protein L16 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rplP PE=3 SV=1 gi\|86610035 - gi\|86610035\|ref\|YP_478797.1\| ribosomal protein L16 [Cyanobacteria bacterium Yellowstone B-Prime]	178.0	[0..1]	[133..1]
RL16_THEPX - 50S ribosomal protein L16 OS=Thermoanaerobacter sp. (strain X514) GN=rplP PE=3 SV=1 gi\|242257808, gi... - gi\|242257808\|ref\|ZP_04802658.1\| ribosomal protein L16 [Thermoanaerobacter sp. X513], gi\|242230652\|gb...	178.0	[0..1]	[136..1]
gi\|7440871 - pir\|\|S77495 ribosomal protein L16 - Synechocystis sp. (strain PCC 6803) RL16_SYNY3 - 50S ribosomal protein L16 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rplP PE=3 SV=... RL16_SYNY3 - 50S ribosomal protein L16 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplP PE=3 SV=1	178.0	[0..1]	[134..1]
RL16_THEP3 - 50S ribosomal protein L16 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplP P... gi\|241883317, gi... - gi\|241904334\|ref\|ZP_04789036.1\| ribosomal protein L16 [Thermoanaerobacter brockii subsp. finnii Ako-...	177.0	[0..1]	[136..1]
RL16_DESHY - 50S ribosomal protein L16 OS=Desulfitobacterium hafniense (strain Y51) GN=rplP PE=3 SV=1	176.0	[0..1]	[136..1]
RL16_NOSP7 - 50S ribosomal protein L16 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplP PE=3 SV=1	176.0	[0..1]	[133..1]
RL16_MICDP - 50S ribosomal protein L16 OS=Microchaete diplosiphon GN=rplP PE=3 SV=1 gi\|48374163 - gi\|48374163\|gb\|AAT41876.1\| 50S ribosomal subunit L16 [Fremyella diplosiphon]	176.0	[0..1]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQPKRTKFR KMHKGRNRGL AQGTDVSFGS FGLKAVGRGR LTARQIEAAR RAMTRAVKRQ  60
   61 GKIWIRVFPD KPITEKPLAV RMGKGKGNVE YWVALIQPGK VLYEMDGVPE ELAREAFKLA 120
  121 AAKLPIKTTF VTKTVM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	1p85K
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.80692012906383	bayes_pls_golite062009
structural molecule activity	9.22985932721781	bayes_pls_golite062009
peptidyltransferase activity	3.65229345531491	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	0.205796305154945	bayes_pls_golite062009
catalytic activity	0.145440139643068	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: