YRC Public Data Repository - Protein Structure Prediction

Protein:	RHLE_ECOLI
Organism:	Escherichia coli
Length:	454 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHLE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75257605, gi\|... - gi\|75257605\|ref\|ZP_00729102.1\| COG0513: Superfamily II DNA and RNA helicases [Escherichia coli E22],... gi\|75210609, gi\|... - gi\|75210609\|ref\|ZP_00710757.1\| COG0513: Superfamily II DNA and RNA helicases [Escherichia coli B171]... gi\|75189838, gi\|... - gi\|75189838\|ref\|ZP_00703105.1\| COG0513: Superfamily II DNA and RNA helicases [Escherichia coli E2437...	409.0	[0..1]	[454..1]
gi\|75236145, gi\|... - gi\|75236145\|ref\|ZP_00720269.1\| COG0513: Superfamily II DNA and RNA helicases [Escherichia coli E1100...	405.0	[0..1]	[442..1]
gi\|82776130, gi\|... - gi\|82776130\|ref\|YP_402477.1\| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197], gi\|812402...	405.0	[0..1]	[442..1]
gi\|84362846 - gi\|84362846\|ref\|ZP_00987458.1\| COG0513: Superfamily II DNA and RNA helicases [Burkholderia dolosa AU...	405.0	[0..1]	[453..1]
gi\|157065952, gi... - gi\|75194948\|ref\|ZP_00705018.1\| COG0513: Superfamily II DNA and RNA helicases [Escherichia coli HS], ...	403.0	[0..1]	[442..1]
gi\|187430867, gi... - gi\|75178413\|ref\|ZP_00698467.1\| COG0513: Superfamily II DNA and RNA helicases [Shigella boydii BS512]...	401.0	[0..1]	[442..1]
gi\|81244653, gi\|... - gi\|82543242\|ref\|YP_407189.1\| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227], gi\|81244653\|gb...	401.0	[0..1]	[442..1]
gi\|73854817, gi\|... - gi\|74311340\|ref\|YP_309759.1\| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046], gi\|73854817\|gb...	401.0	[0..1]	[442..1]
gi\|191174652, gi... - gi\|75235401\|ref\|ZP_00719611.1\| COG0513: Superfamily II DNA and RNA helicases [Escherichia coli F11],... gi\|227838993, gi... - gi\|227884241\|ref\|ZP_04002046.1\| ATP-dependent RNA helicase RhlE [Escherichia coli 83972], gi\|2278389... gi\|26107169, gi\|... - gi\|26246770\|ref\|NP_752810.1\| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073], gi\|26107169\|... gi\|110641001, gi... - gi\|110641001\|ref\|YP_668729.1\| ATP-dependent RNA helicase RhlE [Escherichia coli 536], gi\|110342593\|g...	399.0	[0..1]	[442..1]
gi\|209775908, gi... - pir\|\|D85588 probable ATP-dependent RNA helicase rhlE [imported] - Escherichia coli (strain O157:H7, ... gi\|15800548, gi\|... - gi\|15800548\|ref\|NP_286560.1\| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 EDL933], gi\|1... gi\|15830129, gi\|... - gi\|15830129\|ref\|NP_308902.1\| putative ATP-dependent RNA helicase [Escherichia coli O157:H7], gi\|1336... gi\|15830129, gi\|... - gi\|15830129\|ref\|NP_308902.1\| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. Sakai], ... gi\|209157759, gi... - gi\|209396359\|ref\|YP_002269466.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 ... gi\|217320875, gi... - gi\|217324654\|ref\|ZP_03440738.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 s... gi\|195936837 - gi\|195936837\|ref\|ZP_03082219.1\| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC402... gi\|208728663, gi... - gi\|208808862\|ref\|ZP_03251199.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 s... gi\|254591391, gi... - gi\|254791991\|ref\|YP_003076828.1\| RNA helicase [Escherichia coli O157:H7 str. TW14359], gi\|254591391\|... gi\|208731631, gi... - gi\|208814983\|ref\|ZP_03256162.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 s... gi\|208822342, gi... - gi\|208822342\|ref\|ZP_03262661.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 s... gi\|187767485, gi... - gi\|187767485\|gb\|EDU31329.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. ... gi\|189002895, gi... - gi\|189002895\|gb\|EDU71881.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. ... gi\|189373064, gi... - gi\|189373064\|gb\|EDU91480.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. ... gi\|168799929, gi... - gi\|189377707\|gb\|EDU96123.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. ... gi\|168752016, gi... - gi\|188014049\|gb\|EDU52171.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. ... gi\|189356291, gi... - gi\|189356291\|gb\|EDU74710.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. ... gi\|189365692, gi... - gi\|189365692\|gb\|EDU84108.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. ... gi\|189363536, gi... - gi\|189363536\|gb\|EDU81955.1\| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. ...	399.0	[0..1]	[442..1]

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Predicted Domain #1

Region A:
Residues: [1-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFDSLGLSP DILRAVAEQG YREPTPIQQQ AIPAVLEGRD LMASAQTGTG KTAGFTLPLL  60
   61 QHLITRQPHA KGRRPVRALI LTPTRELAAQ IGENVRDYSK YLNIRSLVVF GGVSINPQMM 120
  121 KLRGGVDVLV ATPGRLLDLE HQNAVKLDQV EILVLDEADR MLDMGFIHDI RRVLTKLPAK 180
  181 RQNLLFSATF SDDIKALAEK LLHNPLEIEV ARRNTASDQV TQHVHFVDKK RKRELLSHMI 240
  241 GKGNWQQVLV FTRTKHGANH LAEQLNKDGI RSAAIHGNKS QGARTRALAD FKSGDIRVLV 300
  301 ATDIAARGLD IEELPHVVNY ELPNVPEDYV HRIGRTGRAA ATGEALSLVC VDEHKLLRDI 360
  361 EKLLKKEIPR IAIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.0
Match:	2i4iA
Description:	No description for 2i4iA was found.

Predicted Domain #2

Region A:
Residues: [375-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYEPDPSIKA EPIQNGRQQR GGGGRGQGGG RGQQQPRRGE GGAKSASAKP AEKPSRRLGD  60
   61 AKPAGEQQRR RRPRKPAAAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	2d7dA
Description:	No description for 2d7dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits