YRC Public Data Repository - Protein Structure Prediction

Protein:	RFAG_ECOLI
Organism:	Escherichia coli
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFAG_ECOLI.

Description	E-value	Query Range	Subject Range
Y1607_METJA, YG0... - (Q59002) Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-), Uncharacterized glycosyltransferase ... Y1607_METJA - Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM...	295.0	[0..1]	[369..1]
gi\|45047722, gi\|... - gi\|45358856\|ref\|NP_988413.1\| glycosyl transferase, group 1 [Methanococcus maripaludis S2], gi\|450477...	280.0	[0..1]	[372..1]
gi\|220932435, gi... - gi\|89210731\|ref\|ZP_01189117.1\| Glycosyl transferase, group 1 [Halothermothrix orenii H 168], gi\|8915...	278.0	[0..1]	[372..1]
gi\|125714043, gi... - gi\|67873277\|ref\|ZP_00503556.1\| Glycosyl transferase, group 1 [Clostridium thermocellum ATCC 27405], ...	275.0	[0..1]	[372..1]
gi\|57159582, gi\|... - gi\|57641258\|ref\|YP_183736.1\| glycosyl transferase family protein [Thermococcus kodakarensis KOD1], g...	274.0	[0..1]	[372..1]
gi\|20905589, gi\|... - gi\|21227244\|ref\|NP_633166.1\| glycosyltransferase [Methanosarcina mazei Go1], gi\|20905589\|gb\|AAM30838...	272.0	[0..1]	[371..1]
gi\|166857219, gi... - gi\|76795460\|ref\|ZP_00777833.1\| Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus AT... gi\|166853121, gi... - gi\|167038881\|ref\|YP_001661866.1\| glycogen synthase [Thermoanaerobacter sp. X514], gi\|166853121\|gb\|AB... gi\|242231503, gi... - gi\|242256969\|ref\|ZP_04801848.1\| glycogen synthase [Thermoanaerobacter sp. X513], gi\|242231503\|gb\|EES... gi\|241885025, gi... - gi\|241902563\|ref\|ZP_04787296.1\| glycogen synthase [Thermoanaerobacter brockii subsp. finnii Ako-1], ...	272.0	[0..1]	[372..4]
gi\|20807430 - gi\|20807430\|ref\|NP_622601.1\| predicted glycosyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20807430, gi\|... - gi\|20807430\|ref\|NP_622601.1\| glycosyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515953...	272.0	[0..2]	[371..8]
gi\|147920342, gi... - gi\|147920342\|ref\|YP_685885.1\| glycosyltransferase (group 1) [uncultured methanogenic archaeon RC-I],...	266.0	[0..1]	[372..1]

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Predicted Domain #1

Region A:
Residues: [1-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVAFCLYKY FPFGGLQRDF MRIASTVAAR GHHVRVYTQS WEGDCPKAFE LIQVPVKSHT  60
   61 NHGRNAEYYA WVQNHLKEHP ADRVVGFNKM PGLDVYFAAD VCYAEKVAQE KGFLYRLTSR 120
  121 YRHYAAFERA TFEQGKSTKL MMLTDKQIAD FQKHYQTEPE RFQILPPGIY PDRKYSEQIP 180
  181 NSREIYRQKN GIKEQQNLLL QVGSDFGRKG VDRSIEALAS LPESLRHNTL LFVVGQDKPR 240
  241 KFEALAEKLG VRSNVHFFSG RNDVSELMAA ADLLLHPAYQ EAAGIVLLEA ITAGLPVLTT 300
  301 AVCGYAHYIA DANCGTVIAE PFSQEQLNEV LRKALTQSPL RMAWAENARH YADTQDLYSL 360
  361 PEKAADIITG GLDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.30103
Match:	2iv7A
Description:	No description for 2iv7A was found.

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring hexosyl groups	3.04530122157712	bayes_pls_golite062009
catalytic activity	3.02192459767177	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.94500176353224	bayes_pls_golite062009
glucosyltransferase activity	1.70489839968253	bayes_pls_golite062009
UDP-N-acetylglucosamine 2-epimerase activity	1.63103907245982	bayes_pls_golite062009
transferase activity	1.60446326175569	bayes_pls_golite062009
lipopolysaccharide heptosyltransferase activity	1.38355990992668	bayes_pls_golite062009
UDP-glucosyltransferase activity	1.31935272422734	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.30934991061674	bayes_pls_golite062009
phosphorylase activity	0.431662083250969	bayes_pls_golite062009
glycogen phosphorylase activity	0.36071680392511	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.27693350081385	bayes_pls_golite062009
glycogen (starch) synthase activity	0.26598547126437	bayes_pls_golite062009
alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	0.12182953801646	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: