YRC Public Data Repository - Protein Structure Prediction

Protein:	REM_ECOLI
Organism:	Escherichia coli
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218694790, gi... - gi\|218694790\|ref\|YP_002402457.1\| conserved hypothetical protein; Qin prophage [Escherichia coli 5598... gi\|82776718, gi\|... - gi\|82776718\|ref\|YP_403067.1\| hypothetical protein SDY_1433 [Shigella dysenteriae Sd197], gi\|81240866... gi\|110805507, gi... - gi\|110805507\|ref\|YP_689027.1\| hypothetical protein SFV_1543 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24112919, gi\|... - ref\|NP_707429.1\| hypothetical protein SF1547 [Shigella flexneri 2a str. 301], gb\|AAN43136.1\| orf, c...	151.0	[0..1]	[83..1]
gi\|30041297, gi\|... - gi\|30063048\|ref\|NP_837219.1\| hypothetical protein S1667 [Shigella flexneri 2a str. 2457T], gi\|300412... gi\|56383473, gi\|... - gi\|56479922\|ref\|NP_707429.2\| hypothetical protein SF1547 [Shigella flexneri 2a str. 301], gi\|5638347...	150.0	[0..2]	[83..1]
gi\|193066817, gi... - gi\|75254907\|ref\|ZP_00726871.1\| hypothetical protein EcolE2_01004892 [Escherichia coli E22], gi\|19306...	148.0	[0..2]	[83..1]
gi\|25302284 - pir\|\|F90850 hypothetical protein ECs1774 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|254792742, gi... - gi\|254792806\|ref\|YP_003077643.1\| hypothetical protein ECSP_1735 [Escherichia coli O157:H7 str. TW143... gi\|209395841, gi... - gi\|209400387\|ref\|YP_002270269.1\| hypothetical protein ECH74115_1842 [Escherichia coli O157:H7 str. E... gi\|13361239, gi\|... - gi\|15831028\|ref\|NP_309801.1\| hypothetical protein ECs1774 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208819247, gi... - gi\|208819247\|ref\|ZP_03259567.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|13361239, gi\|... - gi\|15831028\|ref\|NP_309801.1\| hypothetical protein ECs1774 [Escherichia coli O157:H7], gi\|13361239\|db... gi\|217318655, gi... - gi\|217328228\|ref\|ZP_03444310.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|195940679 - gi\|195940679\|ref\|ZP_03086061.1\| hypothetical protein EscherichcoliO157_30518 [Escherichia coli O157:... gi\|189375201, gi... - gi\|189375201\|gb\|EDU93617.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208731465, gi... - gi\|208815339\|ref\|ZP_03256518.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208811019, gi... - gi\|208811019\|ref\|ZP_03252852.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|168771853, gi... - gi\|189359491\|gb\|EDU77910.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189354260, gi... - gi\|189354260\|gb\|EDU72679.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168784375, gi... - gi\|188998947\|gb\|EDU67933.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168778164, gi... - gi\|187766799\|gb\|EDU30643.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168752685, gi... - gi\|188013570\|gb\|EDU51692.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g...	144.0	[0..2]	[82..1]
gi\|12515002, gi\|... - gi\|15801500\|ref\|NP_287517.1\| hypothetical protein Z2055 [Escherichia coli O157:H7 EDL933], gi\|125150... gi\|25302283 - pir\|\|E85708 unknown protein encoded by prophage CP-933O [imported] - Escherichia coli (strain O157:H...	143.0	[0..2]	[82..1]
gi\|73854763, gi\|... - gi\|74311286\|ref\|YP_309705.1\| hypothetical protein SSON_0720 [Shigella sonnei Ss046], gi\|73854763\|gb\|... gi\|187427745, gi... - gi\|187730753\|ref\|YP_001880190.1\| hypothetical protein SbBS512_E1596 [Shigella boydii CDC 3083-94], g... gi\|82775923, gi\|... - gi\|82775923\|ref\|YP_402270.1\| hypothetical protein SDY_0581 [Shigella dysenteriae Sd197], gi\|81240071...	131.0	[0..2]	[77..1]
gi\|24051138, gi\|... - gi\|24112284\|ref\|NP_706794.1\| hypothetical protein SF0868 [Shigella flexneri 2a str. 301], gi\|2405113... gi\|110804755, gi... - gi\|110804755\|ref\|YP_688275.1\| hypothetical protein SFV_0735 [Shigella flexneri 5 str. 8401], gi\|1106...	130.0	[0..2]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNIEELRKI FCEDGLYAVC VENGNLVSHY RIMCLRKNGA ALINFVDARV TDGFILREGE  60
   61 FVTSLQALKE IGIKAGFSAF SGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits