YRC Public Data Repository - Protein Structure Prediction

Protein:	PUTP_ECOLI
Organism:	Escherichia coli
Length:	502 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUTP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91084087 - gi\|91084087\|ref\|XP_968449.1\| PREDICTED: similar to sodium/solute symporter [Tribolium castaneum]	306.0	[0..1]	[484..7]
gi\|114684359 - gi\|114684359\|ref\|XP_531445.2\| PREDICTED: solute carrier family 5 (inositol transporters), member 3 [...	272.0	[0..3]	[482..5]
gi\|68009824, gi\|... - gi\|68054046\|ref\|ZP_00538211.1\| Na+/solute symporter:Sodium/proline symporter [Exiguobacterium sibiri...	266.0	[0..8]	[494..5]
gi\|73978243 - gi\|73978243\|ref\|XP_539743.2\| PREDICTED: similar to solute carrier family 5 (iodide transporter), mem...	264.0	[0..2]	[463..205]
gi\|89088459, gi\|... - gi\|89097079\|ref\|ZP_01169970.1\| sodium/proline symporter [Bacillus sp. NRRL B-14911], gi\|89088459\|gb\|...	261.0	[0..3]	[493..1]
gi\|163941250, gi... - gi\|89208337\|ref\|ZP_01186849.1\| Na+/solute symporter:Sodium/proline symporter [Bacillus weihenstephan... gi\|228649068, gi... - gi\|229134447\|ref\|ZP_04263260.1\| Osmoregulated proline transporter [Bacillus cereus BDRD-ST196], gi\|2...	259.0	[0..8]	[496..1]
gi\|187731990, gi... - gi\|75175842\|ref\|ZP_00696037.1\| COG0591: Na+/proline symporter [Shigella boydii BS512], gi\|187731990\|...	259.0	[0..1]	[502..1]
gi\|190903010, gi... - gi\|75229936\|ref\|ZP_00716453.1\| COG0591: Na+/proline symporter [Escherichia coli B7A], gi\|191166898\|r...	259.0	[0..1]	[502..1]
gi\|169755512, gi... - gi\|170020584\|ref\|YP_001725538.1\| sodium/proline symporter [Escherichia coli ATCC 8739], gi\|169755512... gi\|188490148, gi... - gi\|75513465\|ref\|ZP_00735869.1\| COG0591: Na+/proline symporter [Escherichia coli 53638], gi\|188494949... gi\|75195202, gi\|... - gi\|75195202\|ref\|ZP_00705272.1\| COG0591: Na+/proline symporter [Escherichia coli HS], gi\|157160540\|re... gi\|124529144, gi... - gi\|124529144\|ref\|ZP_01700254.1\| sodium/proline symporter [Escherichia coli B], gi\|124500099\|gb\|EAY47...	259.0	[0..1]	[502..1]
gi\|74311579, gi\|... - gi\|74311579\|ref\|YP_309998.1\| major sodium/proline symporter [Shigella sonnei Ss046], gi\|73855056\|gb\|...	259.0	[0..1]	[501..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISTPMLVT FCVYIFGMIL IGFIAWRSTK NFDDYILGGR SLGPFVTALS AGASDMSGWL  60
   61 LMGLPGAVFL SGISESWIAI GLTLGAWINW KLVAGRLRVH TEYNNNALTL PDYFTGRFED 120
  121 KSRILRIISA LVILLFFTIY CASGIVAGAR LFESTFGMSY ETALWAGAAA TILYTFIGGF 180
  181 LAVSWTDTVQ ASLMIFALIL TPVIVIISVG GFGDSLEVI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [220-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQKSIENVDM LKGLNFVAII SLMGWGLGYF GQPHILARFM AADSHHSIVH ARRISMTWMI  60
   61 LCLAGAVAVG FFGIAYFND

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [299-502]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPALAGAVNQ NAERVFIELA QILFNPWIAG ILLSAILAAV MSTLSCQLLV CSSAITEDLY  60
   61 KAFLRKHASQ KELVWVGRVM VLVVALVAIA LAANPENRVL GLVSYAWAGF GAAFGPVVLF 120
  121 SVMWSRMTRN GALAGMIIGA LTVIVWKQFG WLGLYEIIPG FIFGSIGIVV FSLLGKAPSA 180
  181 AMQKRFAEAD AHYHSAPPSR LQES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits