YRC Public Data Repository - Protein Structure Prediction

Protein:	PTFC2_ECOLI, PTW...
Organism:	Escherichia coli
Length:	359 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTFC2_ECOLI, PTW....

Description	E-value	Query Range	Subject Range
gi\|18144243, gi\|... - gi\|18309566\|ref\|NP_561500.1\| PTS system [Clostridium perfringens str. 13], gi\|18144243\|dbj\|BAB80290....	251.0	[0..10]	[343..292]
gi\|110674944, gi... - gi\|110800297\|ref\|YP_695018.1\| PTS system, fructose-specific, IIABC component [Clostridium perfringen...	245.0	[0..10]	[343..292]
gi\|110681997, gi... - gi\|110801496\|ref\|YP_697878.1\| fructose specific permease [Clostridium perfringens SM101], gi\|1106819...	242.0	[0..10]	[343..292]
gi\|72495841, gi\|... - gi\|73663326\|ref\|YP_302107.1\| PTS system fructose-specific IIABC component [Staphylococcus saprophyti...	237.0	[0..2]	[351..292]
gi\|22776518, gi\|... - gi\|23098293\|ref\|NP_691759.1\| PTS system fructose-specific enzyme II BC component [Oceanobacillus ihe...	237.0	[0..2]	[340..289]
gi\|255517664 - gi\|255517664\|ref\|ZP_05385340.1\| PTS system, IIBC component [Clostridium difficile QCD-97b34] gi\|255650774 - gi\|255650774\|ref\|ZP_05397676.1\| PTS system, IIBC component [Clostridium difficile QCD-37x79] gi\|145954323, gi... - gi\|90574162\|ref\|ZP_01230666.1\| hypothetical protein CdifQ_02002474 [Clostridium difficile QCD-32g58]... gi\|254975860 - gi\|254975860\|ref\|ZP_05272332.1\| PTS system, IIBC component [Clostridium difficile QCD-66c26] gi\|255093247 - gi\|255093247\|ref\|ZP_05322725.1\| PTS system, IIBC component [Clostridium difficile CIP 107932] gi\|255314989 - gi\|255314989\|ref\|ZP_05356572.1\| PTS system, IIBC component [Clostridium difficile QCD-76w55]	236.0	[0..3]	[341..296]
gi\|255101411 - gi\|255101411\|ref\|ZP_05330388.1\| PTS system, IIBC component [Clostridium difficile QCD-63q42] gi\|115251321, gi... - gi\|126699884\|ref\|YP_001088781.1\| PTS system, IIBC component [Clostridium difficile 630], gi\|11525132...	236.0	[0..3]	[341..296]
gi\|70734353, gi\|... - gi\|70734353\|ref\|YP_257993.1\| PTS system, fructose-specific IIBC component [Pseudomonas fluorescens P...	236.0	[0..3]	[335..232]
gi\|71737234, gi\|... - gi\|71737234\|ref\|YP_273130.1\| phosphotransferase system, fructose-specific IIBC component [Pseudomona...	231.0	[0..2]	[346..231]
gi\|152976110, gi... - gi\|89202202\|ref\|ZP_01180931.1\| Phosphotransferase system PTS, fructose-specific IIB subunit:PTS syst...	231.0	[0..10]	[338..289]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELVQILKN TRQHLMTGVS HMIPFVVSGG ILLAVSVMLY GKGAVPDAVA DPNLKKLFDI  60
   61 GVAGLTLMVP FLAAYIGYSI AERSALAPCA IGAWVGNSFG AGFFGALIAG IIGGIVV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYLKKIPVHK VLRSVMPIFI IPIVGTLITA GIMMWGLGEP VGALTNSLTQ WLQGMQQGSI  60
   61 VMLAVIMGLM LAFDMGGPVN KVAYAFMLIC VAQGVYTVVA IAAVGICIPP LGMGLATLIG 120
  121 RKNFSAEERE TGKAALVMGC VGVTEGAIPF AAADPLRVIP SIMVGSVCGA VTAALVGAQC 180
  181 YAGWGGLIVL PVVEGKLGYI AAVAVGAVVT AVCVNVLKSL ARKNGSSTDE KEDDLDLDFE 240
  241 IN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits