YRC Public Data Repository - Protein Structure Prediction

Protein:	PTPW_ECOLI, PTPC...
Organism:	Escherichia coli
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTPW_ECOLI, PTPC....

Description	E-value	Query Range	Subject Range
gi\|71892222, gi\|... - gi\|71892222\|ref\|YP_277955.1\| PTS family enzyme IIC, mannose-specific [Candidatus Blochmannia pennsyl...	140.0	[0..1]	[132..1]
gi\|81243500, gi\|... - gi\|82779352\|ref\|YP_405701.1\| sorbose-permease PTS system IIC component [Shigella dysenteriae Sd197],...	140.0	[0..1]	[132..1]
gi\|117625432, gi... - gi\|117625432\|ref\|YP_858755.1\| putative phosphotransferase system enzyme subunit [Escherichia coli AP... gi\|124525960, gi... - gi\|124525960\|ref\|ZP_01697965.1\| phosphotransferase system PTS, sorbose-specific IIC subunit [Escheri... gi\|193061984, gi... - gi\|75260062\|ref\|ZP_00731340.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|168749272, gi... - gi\|188016414\|gb\|EDU54536.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|188488624, gi... - gi\|75513344\|ref\|ZP_00735768.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|189358641, gi... - gi\|189358641\|gb\|EDU77060.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|168762095, gi... - gi\|189367602\|gb\|EDU86018.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|189361476, gi... - gi\|189361476\|gb\|EDU79895.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|168773201, gi... - gi\|187770979\|gb\|EDU34823.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|189001140, gi... - gi\|189001140\|gb\|EDU70126.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|189374215, gi... - gi\|189374215\|gb\|EDU92631.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|189379663, gi... - gi\|189379663\|gb\|EDU98079.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|13363485, gi\|... - gi\|15833266\|ref\|NP_312039.1\| N-acetylgalactosamine-specific PTS system enzyme IIC component [Escheri... gi\|83585773, gi\|... - gi\|83585773\|ref\|ZP_00924414.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|209758648, gi... - pir\|\|D91130 hypothetical protein ECs4012 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|157155380, gi... - gi\|75187940\|ref\|ZP_00701207.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|157068297, gi... - gi\|75197083\|ref\|ZP_00707153.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|227887859, gi... - gi\|227887859\|ref\|ZP_04005664.1\| PTS family mannose/fructose/sorbose porter component IIC [Escherichi... gi\|194427711, gi... - gi\|75211083\|ref\|ZP_00711196.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|237706111, gi... - gi\|237706111\|ref\|ZP_04536592.1\| PTS system [Escherichia sp. 3_2_53FAA], gi\|226899151\|gb\|EEH85410.1\| ... gi\|75227539, gi\|... - gi\|75227539\|ref\|ZP_00714298.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|251786404, gi... - gi\|251786404\|ref\|YP_003000708.1\| hypothetical protein B21_02950 [Escherichia coli BL21], gi\|24237867... gi\|75240839, gi\|... - gi\|75240839\|ref\|ZP_00724737.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|253323076, gi... - gi\|254289826\|ref\|YP_003055574.1\| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escheri... gi\|217327741, gi... - gi\|217327741\|ref\|ZP_03443824.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherich... gi\|253974977, gi... - gi\|254163076\|ref\|YP_003046184.1\| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escheri... gi\|218551574, gi... - gi\|218551574\|ref\|YP_002385366.1\| putative enzyme IIC component of PTS [Escherichia fergusonii ATCC 3... gi\|254594482, gi... - gi\|254795082\|ref\|YP_003079919.1\| putative phosphotransferase system enzyme subunit [Escherichia coli... gi\|218555704, gi... - gi\|218555704\|ref\|YP_002388617.1\| putative enzyme IIC component of PTS [Escherichia coli IAI1], gi\|21... gi\|218366977, gi... - gi\|218560208\|ref\|YP_002393121.1\| putative enzyme IIC component of PTS [Escherichia coli S88], gi\|218... gi\|218428992, gi... - gi\|218691428\|ref\|YP_002399640.1\| putative enzyme IIC component of PTS [Escherichia coli ED1a], gi\|21... gi\|218696839, gi... - gi\|218696839\|ref\|YP_002404506.1\| putative enzyme IIC component of PTS [Escherichia coli 55989], gi\|2... gi\|218701907, gi... - gi\|218701907\|ref\|YP_002409536.1\| putative enzyme IIC component of PTS [Escherichia coli IAI39], gi\|2... gi\|218433853, gi... - gi\|218706756\|ref\|YP_002414275.1\| putative enzyme IIC component of PTS [Escherichia coli UMN026], gi\|... gi\|170018616, gi... - gi\|170018616\|ref\|YP_001723570.1\| phosphotransferase system PTS sorbose-specific IIC subunit [Escheri... gi\|170521961, gi... - gi\|170684243\|ref\|YP_001745409.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escheric... gi\|195938353 - gi\|195938353\|ref\|ZP_03083735.1\| phosphotransferase system PTS sorbose-specific IIC subunit [Escheric... gi\|208726590, gi... - gi\|208806789\|ref\|ZP_03249126.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherich... gi\|208733392, gi... - gi\|208812115\|ref\|ZP_03253444.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherich... gi\|208818182, gi... - gi\|208818182\|ref\|ZP_03258502.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherich... gi\|209399451, gi... - gi\|209399451\|ref\|YP_002272605.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escheric... gi\|209913868, gi... - gi\|209920609\|ref\|YP_002294693.1\| PTS system N-acetylgalactosamine-specific IIC component [Escherichi... gi\|91074128, gi\|... - gi\|91212554\|ref\|YP_542540.1\| putative phosphotransferase system enzyme subunit [Escherichia coli UTI... gi\|13363485, gi\|... - gi\|15833266\|ref\|NP_312039.1\| N-acetylgalactosamine-specific PTS system enzyme IIC component [Escheri... gi\|110643377, gi... - gi\|110643377\|ref\|YP_671107.1\| putative phosphotransferase system enzyme subunit (AgaW) [Escherichia ...	139.0	[0..1]	[132..1]
gi\|82546360, gi\|... - gi\|82546360\|ref\|YP_410307.1\| putative sorbose-permease PTS system IIC component [Shigella boydii Sb2...	139.0	[0..1]	[132..1]
gi\|74314512, gi\|... - gi\|74314512\|ref\|YP_312931.1\| putative sorbose-permease PTS system IIC component [Shigella sonnei Ss0...	139.0	[0..1]	[132..1]
gi\|170684109, gi... - gi\|170684109\|ref\|YP_001746406.1\| PTS system mannose/fructose/sorbose family IIC subunit [Escherichia... gi\|191171971, gi... - gi\|191171971\|ref\|ZP_03033516.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric... gi\|26111226, gi\|... - gi\|26250795\|ref\|NP_756835.1\| PTS system, mannose-specific IIC component [Escherichia coli CFT073], g... gi\|226901484, gi... - gi\|237703572\|ref\|ZP_04534053.1\| PTS system [Escherichia sp. 3_2_53FAA], gi\|226901484\|gb\|EEH87743.1\| ... gi\|110644356, gi... - gi\|110644356\|ref\|YP_672086.1\| PTS system, sorbose-specific IIC component [Escherichia coli 536], gi\|... gi\|227886978, gi... - gi\|227886978\|ref\|ZP_04004783.1\| sorbose-permease PTS system IIC component [Escherichia coli 83972], ... gi\|117626286, gi... - gi\|117626286\|ref\|YP_859609.1\| putative sorbose-permease PTS system IIC component SorA [Escherichia c... gi\|91213538, gi\|... - gi\|91213538\|ref\|YP_543524.1\| PTS system, mannose-specific IIC component [Escherichia coli UTI89], gi... gi\|218429866, gi... - gi\|218692302\|ref\|YP_002400514.1\| sorbose permease IIC component (PTS system) [Escherichia coli ED1a]... gi\|218702659, gi... - gi\|218702659\|ref\|YP_002410288.1\| sorbose permease IIC component (PTS system) [Escherichia coli IAI39... gi\|215267427, gi... - gi\|215489355\|ref\|YP_002331786.1\| sorbose-permease PTS system IIC component [Escherichia coli O127:H6... gi\|218561087, gi... - gi\|218561087\|ref\|YP_002394000.1\| sorbose permease IIC component (PTS system) [Escherichia coli S88],...	139.0	[0..1]	[132..1]
gi\|12518957, gi\|... - gi\|15804610\|ref\|NP_290651.1\| putative sorbose PTS component [Escherichia coli O157:H7 EDL933], gi\|12... gi\|189357561, gi... - gi\|189357561\|gb\|EDU75980.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|15834254, gi\|... - gi\|15834254\|ref\|NP_313027.1\| sorbose-permease PTS system IIC component [Escherichia coli O157:H7], g... gi\|188015045, gi... - gi\|188015045\|gb\|EDU53167.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|168780407, gi... - gi\|189001653\|gb\|EDU70639.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|187769895, gi... - gi\|187769895\|gb\|EDU33739.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|168766255, gi... - gi\|189364008\|gb\|EDU82427.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|168760860, gi... - gi\|189368659\|gb\|EDU87075.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|254595417, gi... - gi\|254796017\|ref\|YP_003080854.1\| putative sorbose PTS component [Escherichia coli O157:H7 str. TW143... gi\|15834254, gi\|... - gi\|15834254\|ref\|NP_313027.1\| sorbose-permease PTS system IIC component [Escherichia coli O157:H7 str... gi\|208805758, gi... - gi\|208805758\|ref\|ZP_03248095.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric... gi\|195935783 - gi\|195935783\|ref\|ZP_03081165.1\| sorbose-permease PTS system IIC component [Escherichia coli O157:H7 ... gi\|189379185, gi... - gi\|189379185\|gb\|EDU97601.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|189375031, gi... - gi\|189375031\|gb\|EDU93447.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escherichia ... gi\|217324606, gi... - gi\|217324606\|ref\|ZP_03440690.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric... gi\|209159521, gi... - gi\|209398121\|ref\|YP_002273537.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheri... gi\|25287807, gi\|... - pir\|\|D86094 probable sorbose PTS component Z5615 [imported] - Escherichia coli (strain O157:H7, subs... gi\|208741666, gi... - gi\|208821543\|ref\|ZP_03261863.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric... gi\|208735646, gi... - gi\|208814369\|ref\|ZP_03255698.1\| PTS system, mannose/fructose/sorbose family, IIC component [Escheric...	139.0	[0..1]	[132..1]
gi\|110617414, gi... - gi\|110807866\|ref\|YP_691386.1\| putative sorbose-permease PTS system IIC component [Shigella flexneri ...	139.0	[0..1]	[132..1]
gi\|1439528 - gi\|1439528\|gb\|AAB04154.1\| EIIC-man [Lactobacillus curvatus]	138.0	[0..3]	[132..1]
gi\|24053596, gi\|... - gi\|24114421\|ref\|NP_708931.1\| N-acetylgalactosameine-specific IIC component 2 [Shigella flexneri 2a s... gi\|30042730, gi\|... - gi\|30064471\|ref\|NP_838642.1\| N-acetylgalactosameine-specific IIC component 2 [Shigella flexneri 2a s...	138.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISLLQAFA LGIIAFIAGL DMFNGLTHMH RPVVLGPLVG LVLGDLHTGI LTGGTLELVW  60
   61 MGLAPLAGAQ PPNVIIGTIV GTAFAITTGV KPDVAVGVAV PFAVAVQMGI TFLFSVMSGV 120
  121 MSRCDLATNP RRI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.39794
Match:	PF03609.5
Description:	No description for PF03609.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits