YRC Public Data Repository - Protein Structure Prediction

Protein:	PTPS_ECOLI
Organism:	Escherichia coli
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTPS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115364038, gi... - gi\|115378962\|ref\|ZP_01466095.1\| 6-pyruvoyl tetrahydropterin synthase family [Stigmatella aurantiaca ...	175.0	[0..5]	[121..657]
gi\|85058493, gi\|... - gi\|85058493\|ref\|YP_454195.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Sodalis glossinidius ...	171.0	[0..2]	[121..1]
gi\|121586547, gi... - gi\|121586547\|ref\|ZP_01676333.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae 2... gi\|124116688, gi... - gi\|153212310\|ref\|ZP_01948098.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae 1... gi\|153222955, gi... - gi\|153222955\|ref\|ZP_01953562.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae M... gi\|153820104, gi... - gi\|153820104\|ref\|ZP_01972771.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae N... gi\|153823525, gi... - gi\|229511215\|ref\|ZP_04400694.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae B33], gi\|2293511... gi\|125617912, gi... - gi\|75829229\|ref\|ZP_00758540.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae MO10],... gi\|197751937, gi... - gi\|254286604\|ref\|ZP_04961560.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae A... gi\|147674632, gi... - gi\|75826689\|ref\|ZP_00756124.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae O395],... gi\|148874477, gi... - gi\|153830037\|ref\|ZP_01982704.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Vibrio cholerae 62... gi\|254226643, gi... - gi\|75817726\|ref\|ZP_00748032.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae V51], ... gi\|149739600, gi... - gi\|153826588\|ref\|ZP_01979255.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae M... gi\|75814393, gi\|... - gi\|75814393\|ref\|ZP_00744988.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae V52], ... gi\|227009358, gi... - gi\|227081470\|ref\|YP_002810021.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Vibrio cholerae M... gi\|229357338, gi... - gi\|229505115\|ref\|ZP_04394625.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae BX 330286], gi\|2... gi\|229515675, gi... - gi\|229515675\|ref\|ZP_04405134.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae TMA 21], gi\|2293... gi\|229518333, gi... - gi\|229518333\|ref\|ZP_04407777.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae RC9], gi\|2293450... gi\|229529619, gi... - gi\|229529619\|ref\|ZP_04419009.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae 12129(1)], gi\|22... gi\|9655787, gi\|1... - gi\|9655787\|gb\|AAF94458.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae O1 biov... gi\|11279793 - pir\|\|G82217 probable 6-pyruvoyl tetrahydrobiopterin synthase VC1299 [imported] - Vibrio cholerae (st...	170.0	[0..1]	[121..2]
gi\|9948737, gi\|1... - gi\|9948737\|gb\|AAG06054.1\|AE004695_7 probable 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas ae... gi\|152989185, gi... - gi\|94412899\|ref\|ZP_01292797.1\| hypothetical protein PaerP_01005313 [Pseudomonas aeruginosa PA7], gi\|... gi\|107102187 - gi\|107102187\|ref\|ZP_01366105.1\| hypothetical protein PaerPA_01003238 [Pseudomonas aeruginosa PACS2] gi\|11350848 - pir\|\|H83311 probable 6-pyruvoyl tetrahydrobiopterin synthase PA2666 [imported] - Pseudomonas aerugin... gi\|116050653, gi... - gi\|32037704\|ref\|ZP_00135976.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa... gi\|194546633, gi... - gi\|84320636\|ref\|ZP_00969009.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa... gi\|218771397, gi... - gi\|218891172\|ref\|YP_002440038.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas aerug... gi\|84326995, gi\|... - gi\|84326995\|ref\|ZP_00975019.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa...	170.0	[0..4]	[121..1]
gi\|26109570, gi\|... - gi\|26249163\|ref\|NP_755203.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli CFT0... gi\|91073700, gi\|... - gi\|91212126\|ref\|YP_542112.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli UTI8... gi\|237706612, gi... - gi\|237706612\|ref\|ZP_04537093.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	169.0	[0..1]	[121..29]
gi\|71557763, gi\|... - gi\|71737210\|ref\|YP_275300.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Pseudomonas syringae...	169.0	[0..4]	[121..1]
gi\|110616159, gi... - gi\|110806611\|ref\|YP_690131.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella flexneri 5 ... gi\|254037814, gi... - gi\|254037814\|ref\|ZP_04871872.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683943... gi\|24053178, gi\|... - ref\|NP_708563.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella flexneri 2a str. 301], ...	169.0	[0..1]	[121..29]
gi\|85814033 - gi\|85814033\|emb\|CAF31449.1\| putative gentamicin production protein [Micromonospora echinospora]	169.0	[0..4]	[121..1]
gi\|85813928 - gi\|85813928\|emb\|CAF31557.1\| putative fortimicin production protein [Micromonospora olivasterospora]	169.0	[0..4]	[121..1]
gi\|193063686, gi... - gi\|75258377\|ref\|ZP_00729808.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli E22],...	168.0	[0..2]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSTTLFKDF TFEAAHRLPH VPEGHKCGRL HGHSFMVRLE ITGEVDPHTG WIIDFAELKA  60
   61 AFKPTYERLD HHYLNDIPGL ENPTSEVLAK WIWDQVKPVV PLLSAVMVKE TCTAGCIYRG 120
  121 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	2obaA
Description:	No description for 2obaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits