YRC Public Data Repository - Protein Structure Prediction

Protein:	PTND_ECOLI
Organism:	Escherichia coli
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTND_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|24112793, gi\|... - gi\|24112793\|ref\|NP_707303.1\| mannose-specific PTS system protein IID [Shigella flexneri 2a str. 301]... gi\|30062927, gi\|... - gi\|30062927\|ref\|NP_837098.1\| mannose-specific PTS system protein IID [Shigella flexneri 2a str. 2457... gi\|218361159, gi... - gi\|218554391\|ref\|YP_002387304.1\| mannose-specific PTS system protein IID [Escherichia coli IAI1], gi... gi\|81245152, gi\|... - gi\|82543741\|ref\|YP_407688.1\| mannose-specific PTS system protein IID [Shigella boydii Sb227], gi\|812...	416.0	[0..1]	[286..1]
gi\|110343528, gi... - gi\|110641936\|ref\|YP_669666.1\| mannose-specific PTS system protein IID [Escherichia coli 536], gi\|110...	414.0	[0..4]	[286..1]
gi\|217318227, gi... - gi\|217328880\|ref\|ZP_03444961.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7... gi\|209157356, gi... - gi\|209395956\|ref\|YP_002270898.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H... gi\|188492002, gi... - gi\|75513684\|ref\|ZP_00736060.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|75255554, gi\|... - gi\|75255554\|ref\|ZP_00727341.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|190907976, gi... - gi\|75241312\|ref\|ZP_00725163.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|189000298, gi... - gi\|189000298\|gb\|EDU69284.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7 str... gi\|168770797, gi... - gi\|189360357\|gb\|EDU78776.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7 str... gi\|170019836, gi... - gi\|170019836\|ref\|YP_001724790.1\| mannose-specific PTS system protein IID [Escherichia coli ATCC 8739... gi\|189372035, gi... - gi\|189372035\|gb\|EDU90451.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7 str... gi\|187430856, gi... - gi\|187733864\|ref\|YP_001880616.1\| PTS system, mannose-specific IID component [Shigella boydii CDC 308... gi\|157066965, gi... - gi\|157161285\|ref\|YP_001458603.1\| mannose-specific PTS system protein IID [Escherichia coli HS], gi\|1... gi\|170517757, gi... - gi\|170680039\|ref\|YP_001743427.1\| PTS system, mannose-specific IID component [Escherichia coli SMS-3-... gi\|157080956, gi... - gi\|157158926\|ref\|YP_001463120.1\| mannose-specific PTS system protein IID [Escherichia coli E24377A],... gi\|208731254, gi... - gi\|208816911\|ref\|ZP_03258031.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7... gi\|38704019 - gi\|38704019\|ref\|NP_310556.2\| mannose-specific PTS enzyme IID [Escherichia coli O157:H7] EG10569 - mannose-specific enzyme IID component of PTS / Mannose permease, EIID component; phosphotransferase ... gi\|192955390, gi... - gi\|193071295\|ref\|ZP_03052214.1\| PTS system, mannose-specific IID component [Escherichia coli E110019... gi\|124530986, gi... - gi\|124530986\|ref\|ZP_01701442.1\| PTS system, mannose/fructose/sorbose family, IID subunit [Escherichi... gi\|227885755, gi... - gi\|227885755\|ref\|ZP_04003560.1\| mannose-specific PTS system protein IID [Escherichia coli 83972], gi... gi\|253773227, gi... - gi\|253773227\|ref\|YP_003036058.1\| PTS system, mannose/fructose/sorbose family, IID subunit [Escherich... gi\|38704019 - gi\|38704019\|ref\|NP_310556.2\| mannose-specific PTS enzyme IID [Escherichia coli O157:H7 str. Sakai] EG10569 - mannose-specific enzyme IID component of PTS / Mannose permease, EIID component; phosphotransferase ... sp\|P69805\|PTND_ECOLI - Mannose permease IID component OS=Escherichia coli (strain K12) GN=manZ PE=1 SV=2	412.0	[0..4]	[286..1]
gi\|170121039, gi... - gi\|170770082\|ref\|ZP_02904535.1\| PTS system, mannose-specific IID component [Escherichia albertii TW0... gi\|110614936, gi... - gi\|110805388\|ref\|YP_688908.1\| mannose-specific PTS system protein IID [Shigella flexneri 5 str. 8401... gi\|194416811, gi... - gi\|194434923\|ref\|ZP_03067167.1\| PTS system, mannose-specific IID component [Shigella dysenteriae 101... gi\|209919184, gi... - gi\|209919184\|ref\|YP_002293268.1\| mannose-specific PTS system protein IID [Escherichia coli SE11], gi...	410.0	[0..4]	[286..1]
gi\|77959075, gi\|... - gi\|77959075\|ref\|ZP_00823098.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	402.0	[0..8]	[285..15]
gi\|77961558 - gi\|77961558\|ref\|ZP_00825392.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	400.0	[0..8]	[285..15]
lcl\|NC_016856.1_... - [gene=manZ] [protein=mannose-specific PTS system protein IID] [protein_id=YP_005237773.1] [location=... gi\|62180396, gi\|... - gi\|62180396\|ref\|YP_216813.1\| mannose-specific PTS system protein IID [Salmonella enterica subsp. ent... gi\|213418808 - gi\|213418808\|ref\|ZP_03351874.1\| mannose-specific PTS system protein IID [Salmonella enterica subsp. ... gi\|16420364, gi\|... - gi\|16765173\|ref\|NP_460788.1\| mannose-specific PTS system protein IID [Salmonella typhimurium LT2], g... gi\|224583677, gi... - gi\|224583677\|ref\|YP_002637475.1\| phosphotransferase enzyme II, D component [Salmonella enterica subs... gi\|205272284, gi... - gi\|205352503\|ref\|YP_002226304.1\| mannose-specific PTS system protein IID [Salmonella enterica subsp.... gi\|207856662, gi... - gi\|207856662\|ref\|YP_002243313.1\| mannose-specific PTS system protein IID [Salmonella enterica subsp.... gi\|161486809 - gi\|161486809\|ref\|NP_804863.2\| mannose-specific PTS system protein IID [Salmonella enterica subsp. en... gi\|161501933 - gi\|161501933\|ref\|NP_456338.2\| mannose-specific PTS system protein IID [Salmonella enterica subsp. en...	400.0	[0..1]	[285..1]
gi\|229680358, gi... - gi\|229902911\|ref\|ZP_04518028.1\| mannose-specific enzyme IID component of PTS [Yersinia pestis Nepal5... gi\|162100179 - gi\|162100179\|ref\|YP_651040.2\| mannose-specific PTS system protein IID [Yersinia pestis Antiqua] gi\|229701117, gi... - gi\|229896194\|ref\|ZP_04511364.1\| mannose-specific enzyme IID component of PTS [Yersinia pestis Pestoi... gi\|167048455, gi... - gi\|167402180\|ref\|ZP_02307655.1\| PTS system, mannose/fructose/sorbose family, IID component [Yersinia... gi\|166210554, gi... - gi\|166210554\|ref\|ZP_02236589.1\| PTS system, mannose/fructose/sorbose family, IID component [Yersinia... gi\|229897857, gi... - gi\|229897857\|ref\|ZP_04513008.1\| mannose-specific enzyme IID component of PTS [Yersinia pestis biovar... gi\|165928006, gi... - gi\|165928006\|ref\|ZP_02223838.1\| PTS system, mannose/fructose/sorbose family, IID component [Yersinia... gi\|229693467, gi... - gi\|229897130\|ref\|ZP_04512286.1\| mannose-specific enzyme IID component of PTS [Yersinia pestis biovar... gi\|149366293, gi... - gi\|149366293\|ref\|ZP_01888328.1\| PTS system, mannose-specific IID component [Yersinia pestis CA88-412... gi\|22126434, gi\|... - gi\|22126434\|ref\|NP_669857.1\| mannose-specific PTS system protein IID [Yersinia pestis KIM], gi\|21959... gi\|25287787 - pir\|\|AC0214 PTS system, mannose-specific IID component [imported] - Yersinia pestis (strain CO92) gi\|51589250, gi\|... - gi\|51595968\|ref\|YP_070159.1\| mannose-specific PTS system protein IID [Yersinia pseudotuberculosis IP... gi\|45441452, gi\|... - gi\|45441452\|ref\|NP_992991.1\| mannose-specific PTS system protein IID [Yersinia pestis biovar Microtu... gi\|115347491, gi... - gi\|218928880\|ref\|YP_002346755.1\| mannose-specific PTS system protein IID [Yersinia pestis CO92], gi\|... Q66BY4\|Q66BY4_YERPS - PTS system, mannose-specific IID component - Yersinia pseudotuberculosis	398.0	[0..13]	[285..22]
gi\|145210350, gi... - gi\|145598654\|ref\|YP_001162730.1\| mannose-specific PTS system protein IID [Yersinia pestis Pestoides ... gi\|108812528, gi... - gi\|108812528\|ref\|YP_648295.1\| PTS system, mannose-specific IID component [Yersinia pestis Nepal516],... gi\|153950357, gi... - gi\|77628832\|ref\|ZP_00791418.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|108807124, gi... - gi\|108807124\|ref\|YP_651040.1\| PTS system, mannose-specific IID component [Yersinia pestis Antiqua], ... gi\|165990190, gi... - gi\|166010846\|ref\|ZP_02231744.1\| PTS system, mannose/fructose/sorbose family, IID component [Yersinia... gi\|89104611, gi\|... - gi\|89104611\|ref\|ZP_01177150.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|170024691, gi... - gi\|170024691\|ref\|YP_001721196.1\| mannose-specific PTS system protein IID [Yersinia pseudotuberculosi... gi\|186895067, gi... - gi\|186895067\|ref\|YP_001872179.1\| mannose-specific PTS system protein IID [Yersinia pseudotuberculosi... gi\|167420317, gi... - gi\|167420317\|ref\|ZP_02312070.1\| PTS system, mannose/fructose/sorbose family, IID component [Yersinia... gi\|167425887, gi... - gi\|167425887\|ref\|ZP_02317640.1\| PTS system, mannose/fructose/sorbose family, IID component [Yersinia...	398.0	[0..13]	[285..19]
gi\|77972314 - gi\|77972314\|ref\|ZP_00827884.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	396.0	[0..13]	[286..14]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEMVDTTQT TTEKKLTQSD IRGVFLRSNL FQGSWNFERM QALGFCFSMV PAIRRLYPEN  60
   61 NEARKQAIRR HLEFFNTQPF VAAPILGVTL ALEEQRANGA EIDDGAINGI KVGLMGPLAG 120
  121 VGDPIFWGTV RPVFAALGAG IAMSGSLLGP LLFFILFNLV RLATRYYGVA YGYSKGIDIV 180
  181 KDMGGGFLQK LTEGASILGL FVMGALVNKW THVN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [215-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPLVVSRITD QTGKEHVTTV QTILDQLMPG LVPLLLTFAC MWLLRKKVNP LWIIVGFFVI  60
   61 GIAGYACGLL GL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits