YRC Public Data Repository - Protein Structure Prediction

Protein:	PTKB_ECOLI
Organism:	Escherichia coli
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTKB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46908544, gi\|... - gi\|46908544\|ref\|YP_014933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...	92.0	[0..2]	[94..1]
gi\|224500607 - gi\|224500607\|ref\|ZP_03668956.1\| hypothetical protein LmonF1_13411 [Listeria monocytogenes Finland 19... gi\|224503738 - gi\|224503738\|ref\|ZP_03672045.1\| hypothetical protein LmonFR_14764 [Listeria monocytogenes FSL R2-561... gi\|16804411 - gi\|16804411\|ref\|NP_465896.1\| hypothetical protein lmo2373 [Listeria monocytogenes EGD-e] gi\|16411861, gi\|... - pir\|\|AE1371 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB component homolog lmo... gi\|254826366 - gi\|254826366\|ref\|ZP_05231367.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254829562 - gi\|254829562\|ref\|ZP_05234249.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|226224923, gi... - gi\|226224923\|ref\|YP_002759030.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB ... gi\|254901165 - gi\|254901165\|ref\|ZP_05261089.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254914048 - gi\|254914048\|ref\|ZP_05264060.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254854476 - gi\|254854476\|ref\|ZP_05243824.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254880423 - gi\|254880423\|ref\|ZP_05253133.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254992401 - gi\|254992401\|ref\|ZP_05274591.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|255521508 - gi\|255521508\|ref\|ZP_05388745.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254933430 - gi\|254933430\|ref\|ZP_05266789.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254938363 - gi\|254938363\|ref\|ZP_05270060.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...	88.0	[0..2]	[94..1]
gi\|47095852, gi\|... - gi\|47095852\|ref\|ZP_00233456.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogene... gi\|127764552, gi... - gi\|153192012\|ref\|ZP_01939078.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|133731868, gi... - gi\|153180475\|ref\|ZP_01933518.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|153175605, gi... - gi\|153175605\|ref\|ZP_01930933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...	88.0	[0..2]	[94..42]
gi\|82543461, gi\|... - gi\|82543461\|ref\|YP_407408.1\| galactitol-specific PTS system component IIB [Shigella boydii Sb227], g...	86.0	[0..1]	[94..1]
gi\|75236282, gi\|... - gi\|75236282\|ref\|ZP_00720391.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|190901959, gi... - gi\|75228818\|ref\|ZP_00715423.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|75186884, gi\|... - gi\|75186884\|ref\|ZP_00700151.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|194431551, gi... - gi\|83571169\|ref\|ZP_00922610.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|218554658, gi... - gi\|218554658\|ref\|YP_002387571.1\| galactitol-specific PTS system component IIB [Escherichia coli IAI1... gi\|218352444, gi... - gi\|218695712\|ref\|YP_002403379.1\| galactitol-specific PTS system component IIB [Escherichia coli 5598...	85.0	[0..1]	[94..1]
gi\|16414994, gi\|... - pir\|\|AC1741 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB component homolog lin... gi\|16801534 - gi\|16801534\|ref\|NP_471802.1\| hypothetical protein lin2472 [Listeria innocua Clip11262]	85.0	[0..2]	[94..1]
gi\|91072953, gi\|... - gi\|91211379\|ref\|YP_541365.1\| galactitol-specific PTS system component IIB [Escherichia coli UTI89], ... gi\|110343893, gi... - gi\|110642301\|ref\|YP_670031.1\| galactitol-specific PTS system component IIB [Escherichia coli 536], g... gi\|191169917, gi... - gi\|75242911\|ref\|ZP_00726617.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|115513424, gi... - gi\|117624300\|ref\|YP_853213.1\| galactitol-specific PTS system component IIB [Escherichia coli APEC O1... gi\|218699317, gi... - gi\|218699317\|ref\|YP_002406946.1\| galactitol-specific PTS system component IIB [Escherichia coli IAI3... gi\|237704550, gi... - gi\|237704550\|ref\|ZP_04535031.1\| galactitol-specific PTS system component IIB [Escherichia sp. 3_2_53...	85.0	[0..1]	[94..1]
gi\|24052503, gi\|... - gi\|24113471\|ref\|NP_707981.1\| galactitol-specific PTS system component IIB [Shigella flexneri 2a str.... PTKB_ECOL6 - Galactitol-specific phosphotransferase enzyme IIB component OS=Escherichia coli O6:H1 (strain CFT073... gi\|30063534, gi\|... - gi\|30063534\|ref\|NP_837705.1\| galactitol-specific PTS system component IIB [Shigella flexneri 2a str.... PTKB_ECO57 - Galactitol-specific phosphotransferase enzyme IIB component OS=Escherichia coli O157:H7 GN=gatB PE=3... gi\|15802568, gi\|... - gi\|15802568\|ref\|NP_288595.1\| galactitol-specific PTS system component IIB [Escherichia coli O157:H7 ... gi\|193062851, gi... - gi\|75259256\|ref\|ZP_00730604.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|15832150, gi\|... - gi\|15832150\|ref\|NP_310923.1\| galactitol-specific PTS system component IIB [Escherichia coli O157:H7 ... gi\|194428922, gi... - gi\|75209902\|ref\|ZP_00710094.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|110806056, gi... - gi\|110806056\|ref\|YP_689576.1\| galactitol-specific PTS system component IIB [Shigella flexneri 5 str.... gi\|188490811, gi... - gi\|75514118\|ref\|ZP_00736448.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|227835495, gi... - gi\|227887145\|ref\|ZP_04004950.1\| protein-N(pi)-phosphohistidine--sugar phosphotransferase [Escherichi... gi\|254593316, gi... - gi\|254793916\|ref\|YP_003078753.1\| galactitol-specific enzyme IIB component of PTS [Escherichia coli O... PTKB_SHIFL - Galactitol-specific phosphotransferase enzyme IIB component OS=Shigella flexneri GN=gatB PE=3 SV=1 gi\|25517966, gi\|... - gi\|508174\|emb\|CAA56229.1\| gatB [Escherichia coli], pir\|\|B85836 phosphotransferase system enzyme II, ... gi\|168770068, gi... - gi\|189360962\|gb\|EDU79381.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157:H7 ... gi\|189367808, gi... - gi\|189367808\|gb\|EDU86224.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157:H7 ... gi\|189000069, gi... - gi\|189000069\|gb\|EDU69055.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157:H7 ... gi\|168775955, gi... - gi\|187768555\|gb\|EDU32399.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157:H7 ... gi\|168798980, gi... - gi\|189378455\|gb\|EDU96871.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157:H7 ... gi\|189371266, gi... - gi\|189371266\|gb\|EDU89682.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157:H7 ... gi\|195937862 - gi\|195937862\|ref\|ZP_03083244.1\| galactitol-specific PTS system component IIB [Escherichia coli O157:... gi\|170680100, gi... - gi\|170680100\|ref\|YP_001743050.1\| PTS system, galactitol-specific IIB component [Escherichia coli SMS... gi\|189356528, gi... - gi\|189356528\|gb\|EDU74947.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157:H7 ... gi\|168750137, gi... - gi\|188015635\|gb\|EDU53757.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157:H7 ... PTKB_ECOL6 - Galactitol-specific phosphotransferase enzyme IIB component OS=Escherichia coli O6 GN=gatB PE=1 SV=1 gi\|208735887, gi... - gi\|208814610\|ref\|ZP_03255939.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157... gi\|208726542, gi... - gi\|208806741\|ref\|ZP_03249078.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157... gi\|209399554, gi... - gi\|209399554\|ref\|YP_002271372.1\| PTS system, galactitol-specific IIB component [Escherichia coli O15... gi\|208738744, gi... - gi\|208818621\|ref\|ZP_03258941.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157... gi\|217329558, gi... - gi\|217329558\|ref\|ZP_03445637.1\| PTS system, galactitol-specific IIB component [Escherichia coli O157...	85.0	[0..1]	[94..1]
gi\|187429842, gi... - gi\|75177206\|ref\|ZP_00697304.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component...	85.0	[0..1]	[94..1]
gi\|194436102, gi... - gi\|83588078\|ref\|ZP_00926703.1\| COG3414: Phosphotransferase system, galactitol-specific IIB component... gi\|253772978, gi... - gi\|254288868\|ref\|YP_003054616.1\| galactitol-specific enzyme IIB component of PTS [Escherichia coli B... gi\|242377741, gi... - gi\|251785468\|ref\|YP_002999772.1\| hypothetical protein B21_01985 [Escherichia coli BL21], gi\|24237774... gi\|253974006, gi... - gi\|254162105\|ref\|YP_003045213.1\| galactitol-specific enzyme IIB component of PTS [Escherichia coli B...	85.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKIIVACG GAVATSTMAA EEIKELCQNH NIPVELIQCR VNEIETYMDG VHLICTTAKV  60
   61 DRSFGDIPLV HGMPFISGIG IEALQNKILT ILQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.09691
Match:	1tvmA
Description:	NMR structure of enzyme GatB of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits