YRC Public Data Repository - Protein Structure Prediction

Protein:	PTKA_ECOLI
Organism:	Escherichia coli
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTKA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|152976110, gi... - gi\|89202202\|ref\|ZP_01180931.1\| Phosphotransferase system PTS, fructose-specific IIB subunit:PTS syst...	148.0	[0..1]	[150..7]
gi\|41584042, gi\|... - gi\|42519753\|ref\|NP_965683.1\| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, f...	147.0	[0..1]	[149..7]
gi\|103423772, gi... - gi\|104774691\|ref\|YP_619671.1\| PTS system, fructose-specific enzyme IIABC component [Lactobacillus de...	147.0	[0..1]	[150..7]
gi\|62516288, gi\|... - gi\|62516288\|ref\|ZP_00387645.1\| COG1299: Phosphotransferase system, fructose-specific IIC component [...	146.0	[0..1]	[150..7]
gi\|227902793, gi... - gi\|227902793\|ref\|ZP_04020598.1\| PTS system, fructose-specific enzyme II [Lactobacillus acidophilus A... gi\|58338030, gi\|... - gi\|58338030\|ref\|YP_194615.1\| PTS system, fructose-specific enzyme II [Lactobacillus acidophilus NCFM...	146.0	[0..1]	[150..7]
gi\|56420373, gi\|... - gi\|56420373\|ref\|YP_147691.1\| PTS system, fructose-specific enzyme II, BC component [Geobacillus kaus... gi\|47076798 - gi\|47076798\|dbj\|BAD18340.1\| PTS system, fructose C-specific enzyme II, BC component [Geobacillus kau...	143.0	[0..1]	[138..7]
gi\|51975240, gi\|... - gi\|52141771\|ref\|YP_085058.1\| PTS fructose-specific enzyme IIBC component [Bacillus cereus E33L], gi\|...	143.0	[0..1]	[150..7]
gi\|116630280, gi... - gi\|23002973\|ref\|ZP_00046644.1\| hypothetical protein Lgas_03000980 [Lactobacillus gasseri ATCC 33323]... gi\|226819377 - gi\|226819377\|ref\|ZP_03808496.1\| fusion of IIA, IIB and IIC component of mannitol/fructose-specific p... gi\|23002973 - gi\|23002973\|ref\|ZP_00046644.1\| COG1299: Phosphotransferase system, fructose-specific IIC component [...	142.0	[0..1]	[149..7]
gi\|254992017 - gi\|254992017\|ref\|ZP_05274207.1\| phosphotransferase system (PTS) fructose-specific enzyme IIABC compo... gi\|254878112 - gi\|254878112\|ref\|ZP_05250822.1\| phosphotransferase system (PTS) fructose-specific enzyme IIABC compo... gi\|255519750 - gi\|255519750\|ref\|ZP_05386987.1\| phosphotransferase system (PTS) fructose-specific enzyme IIABC compo... gi\|46881777, gi\|... - gi\|46908505\|ref\|YP_014894.1\| PTS system, fructose-specific, IIABC component [Listeria monocytogenes ... gi\|47019210, gi\|... - gi\|47092433\|ref\|ZP_00230223.1\| PTS system, fructose-specific, IIABC component [Listeria monocytogene... gi\|153168181, gi... - gi\|153168181\|ref\|ZP_01928191.1\| PTS system, fructose-specific, IIABC component [Listeria monocytogen... gi\|226224880, gi... - gi\|226224880\|ref\|YP_002758987.1\| phosphotransferase system (PTS) fructose-specific enzyme IIABC comp... gi\|254933337, gi... - gi\|254933337\|ref\|ZP_05266696.1\| phosphotransferase system (PTS) fructose-specific enzyme IIABC compo... gi\|254854287 - gi\|254854287\|ref\|ZP_05243635.1\| phosphotransferase system (PTS) fructose-specific enzyme IIABC compo... gi\|254825090 - gi\|254825090\|ref\|ZP_05230091.1\| phosphotransferase system (PTS) fructose-specific enzyme IIABC compo...	142.0	[0..1]	[150..7]
gi\|254831240, gi... - gi\|254831240\|ref\|ZP_05235895.1\| hypothetical protein Lmon1_07777 [Listeria monocytogenes 10403S], gi... gi\|153186535, gi... - gi\|254901139\|ref\|ZP_05261063.1\| hypothetical protein LmonJ_15033 [Listeria monocytogenes J0161], gi\|... gi\|153175537, gi... - gi\|254826840\|ref\|ZP_05231527.1\| hypothetical protein LmonocytogeFSL_00150 [Listeria monocytogenes FS... gi\|224499014 - gi\|224499014\|ref\|ZP_03667363.1\| hypothetical protein LmonF1_04653 [Listeria monocytogenes Finland 19... gi\|254914011, gi... - gi\|254914011\|ref\|ZP_05264023.1\| hypothetical protein LmonJ2_14493 [Listeria monocytogenes J2818], gi... gi\|47096033, gi\|... - gi\|47096033\|ref\|ZP_00233635.1\| PTS system, fructose-specific, IIABC component [Listeria monocytogene... gi\|254938326, gi... - gi\|254938326\|ref\|ZP_05270023.1\| hypothetical protein LmonF6_14421 [Listeria monocytogenes F6900], gi...	141.0	[0..1]	[150..7]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLFVRSGI SFVDRSEVLT HIGNEMLAKG VVHDTWPQAL IAREAEFPTG IMLEQHAIAI  60
   61 PHCEAIHAKS SAIYLLRPTN KVHFQQADDD NDVAVSLVIA LIVENPQQQL KLLRCLFGKL 120
  121 QQPDIVETLI TLPETQLKEY FTKYVLDSDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	1xizA
Description:	Structural Genomics, The crystal structure of domain IIA of putative phosphotransferase system specific for mannitol/fructose from Salmonella typhimurium
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits