YRC Public Data Repository - Protein Structure Prediction

Protein:	PTCA_ECOLI, PTQA...
Organism:	Escherichia coli
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTCA_ECOLI, PTQA....

Description	E-value	Query Range	Subject Range
gi\|77978444 - gi\|77978444\|ref\|ZP_00833873.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	140.0	[0..1]	[115..15]
gi\|110615004, gi... - gi\|110805456\|ref\|YP_688976.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [S... gi\|24051806, gi\|... - ref\|NP_707375.1\| PEP-dependent phosphotransferase enzyme III for cellobiose, arbutin, and salicin [S...	139.0	[0..1]	[116..36]
gi\|77973078 - gi\|77973078\|ref\|ZP_00828630.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	137.0	[0..1]	[114..15]
gi\|238796688, gi... - gi\|77961647\|ref\|ZP_00825480.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	137.0	[0..1]	[115..1]
gi\|238714276, gi... - gi\|77957765\|ref\|ZP_00821813.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	136.0	[0..1]	[115..1]
gi\|218705234, gi... - gi\|218705234\|ref\|YP_002412753.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|145494 - gi\|145494\|gb\|AAA23556.1\| PTS enzyme III cel	133.0	[0..1]	[116..1]
gi\|115513032, gi... - gi\|117623908\|ref\|YP_852821.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [E... gi\|91072524, gi\|... - gi\|91210950\|ref\|YP_540936.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Es... gi\|218427241, gi... - gi\|218689677\|ref\|YP_002397889.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|218558604, gi... - gi\|218558604\|ref\|YP_002391517.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|237705685, gi... - gi\|237705685\|ref\|ZP_04536166.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|145500 - gi\|145500\|gb\|AAA23559.1\| PTS enzyme III cel	133.0	[0..1]	[116..1]
gi\|117672813, gi... - gi\|77629962\|ref\|ZP_00792548.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	132.0	[0..1]	[115..1]
gi\|25288002 - pir\|\|AH0326 protein-Npi-phosphohistidine-sugar phosphotransferase (EC 2.7.1.69) IIA component [impor... gi\|45442265, gi\|... - gi\|45442265\|ref\|NP_993804.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Ye... gi\|165992649, gi... - gi\|166008267\|ref\|ZP_02229165.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|22125153, gi\|... - gi\|22125153\|ref\|NP_668576.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Ye... gi\|165922877, gi... - gi\|165925270\|ref\|ZP_02221102.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|115348364, gi... - gi\|218929753\|ref\|YP_002347628.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|167399312, gi... - gi\|167399312\|ref\|ZP_02304836.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|51597245, gi\|... - gi\|51597245\|ref\|YP_071436.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Ye... gi\|166212353, gi... - gi\|166212353\|ref\|ZP_02238388.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|167423658, gi... - gi\|167423658\|ref\|ZP_02315411.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|166960651, gi... - gi\|167421162\|ref\|ZP_02312915.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|149291842, gi... - gi\|149365429\|ref\|ZP_01887464.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis CA88-... gi\|108811329, gi... - gi\|229901576\|ref\|ZP_04516698.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis Nepal... gi\|145210572, gi... - gi\|145598876\|ref\|YP_001162952.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|108808403, gi... - gi\|108808403\|ref\|YP_652319.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Y... gi\|89102197, gi\|... - gi\|89102197\|ref\|ZP_01174850.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... Q667R2\|Q667R2_YERPS - PTS system, cellobiose-specific IIA component - Yersinia pseudotuberculosis gi\|229694603, gi... - gi\|229838237\|ref\|ZP_04458396.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis biova... gi\|170023392, gi... - gi\|170023392\|ref\|YP_001719897.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|229895568, gi... - gi\|229895568\|ref\|ZP_04510739.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis Pesto... gi\|167467829 - gi\|167467829\|ref\|ZP_02332533.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|229898802, gi... - gi\|229898802\|ref\|ZP_04513947.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis biova... gi\|186699373, gi... - gi\|186896347\|ref\|YP_001873459.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA...	131.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDLDNIPDT QTEAEELEEV VMGLIINSGQ ARSLAYAALK QAKQGDFAAA KAMMDQSRMA  60
   61 LNEAHLVQTK LIEGDAGEGK MKVSLVLVHA QDHLMTSMLA RELITELIEL HEKLKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.221849
Match:	1wcrA
Description:	Trimeric Structure of the Enzyme IIA from Escherichia coli Phosphotransferase System Specific for N,N'-Diacetylchitobiose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits