YRC Public Data Repository - Protein Structure Prediction

Protein:	PSTS_ECOLI
Organism:	Escherichia coli
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSTS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77634105, gi\|... - gi\|77634105\|ref\|ZP_00796213.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|229839825, gi... - gi\|229839825\|ref\|ZP_04459984.1\| phosphate transporter subunit; periplasmic-binding component of ABC ... gi\|77630942, gi\|... - gi\|77630942\|ref\|ZP_00793528.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|229841910, gi... - gi\|229841910\|ref\|ZP_04462066.1\| phosphate transporter subunit; periplasmic-binding component of ABC ... gi\|229896787, gi... - gi\|229896787\|ref\|ZP_04511950.1\| phosphate transporter subunit; periplasmic-binding component of ABC ... gi\|165926222, gi... - gi\|165926222\|ref\|ZP_02222054.1\| phosphate ABC transporter, phosphate-binding protein PstS [Yersinia ... gi\|166213210, gi... - gi\|166213210\|ref\|ZP_02239245.1\| phosphate ABC transporter, phosphate-binding protein PstS [Yersinia ... gi\|165991435, gi... - gi\|166009513\|ref\|ZP_02230411.1\| phosphate ABC transporter, phosphate-binding protein PstS [Yersinia ... gi\|166958231, gi... - gi\|167422839\|ref\|ZP_02314592.1\| phosphate ABC transporter, phosphate-binding protein PstS [Yersinia ... gi\|167401566, gi... - gi\|167401566\|ref\|ZP_02307060.1\| phosphate ABC transporter, phosphate-binding protein PstS [Yersinia ... Q663R2\|Q663R2_YERPS - ABC transporter, periplasmic phosphate-binding protein pstS precursor - Yersinia pseudotuberculosis gi\|108782065, gi... - gi\|108810152\|ref\|YP_654068.1\| phosphate transporter subunit [Yersinia pestis Antiqua], gi\|108782065\|... gi\|229904675, gi... - gi\|229904675\|ref\|ZP_04519786.1\| phosphate transporter subunit; periplasmic-binding component of ABC ... gi\|25296902 - pir\|\|AI0499 probable phosphate-binding periplasmic protein pstS [imported] - Yersinia pestis (strain... gi\|45443747, gi\|... - gi\|45443747\|ref\|NP_995286.1\| phosphate transporter subunit [Yersinia pestis biovar Microtus str. 910... gi\|21961146, gi\|... - gi\|22127999\|ref\|NP_671422.1\| phosphate transporter subunit [Yersinia pestis KIM], gi\|21961146\|gb\|AAM... gi\|218931093, gi... - gi\|218931093\|ref\|YP_002348968.1\| phosphate ABC transporter periplasmic substrate-binding protein Pst... gi\|51598247, gi\|... - gi\|51598247\|ref\|YP_072438.1\| phosphate transporter subunit [Yersinia pseudotuberculosis IP 32953], g... gi\|89104504, gi\|... - gi\|89104504\|ref\|ZP_01177045.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|167468120 - gi\|167468120\|ref\|ZP_02332824.1\| phosphate ABC transporter, phosphate-binding protein PstS [Yersinia ... gi\|167055591, gi... - gi\|167425577\|ref\|ZP_02317330.1\| phosphate ABC transporter, phosphate-binding protein PstS [Yersinia ... gi\|186897474, gi... - gi\|186897474\|ref\|YP_001874586.1\| phosphate ABC transporter periplasmic substrate-binding protein Pst... gi\|169752969, gi... - gi\|170026435\|ref\|YP_001722940.1\| phosphate ABC transporter periplasmic substrate-binding protein Pst... gi\|145601156, gi... - gi\|145601156\|ref\|YP_001165232.1\| phosphate transporter subunit [Yersinia pestis Pestoides F], gi\|145... gi\|149290357, gi... - gi\|150260949\|ref\|ZP_01917677.1\| phosphate-binding periplasmic protein [Yersinia pestis CA88-4125], g...	340.0	[0..1]	[346..1]
gi\|238724200, gi... - gi\|77973796\|ref\|ZP_00829341.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	340.0	[0..1]	[346..1]
gi\|2547078 - gi\|2547078\|dbj\|BAA22861.1\| phosphate-binding protein [Enterobacter cloacae]	338.0	[0..1]	[346..1]
gi\|49613919, gi\|... - gi\|50123393\|ref\|YP_052560.1\| phosphate transporter subunit [Pectobacterium atrosepticum SCRI1043], g...	338.0	[0..1]	[346..1]
gi\|208813647, gi... - gi\|208813647\|ref\|ZP_03254976.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Pst... gi\|208820833, gi... - gi\|208820833\|ref\|ZP_03261153.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Pst... gi\|209400241, gi... - gi\|209400241\|ref\|YP_002273251.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Ps... gi\|217324937, gi... - gi\|217324937\|ref\|ZP_03441021.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Pst... gi\|15833918, gi\|... - gi\|15833918\|ref\|NP_312691.1\| PstS [Escherichia coli O157:H7], gi\|13364139\|dbj\|BAB38087.1\| phosphate-... gi\|189373420, gi... - gi\|189373420\|gb\|EDU91836.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|209753930, gi... - pir\|\|H86057 phosphate-binding periplasmic protein PstS [imported] - Escherichia coli (strain O157:H7... gi\|168798767, gi... - gi\|189378802\|gb\|EDU97218.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|195936350 - gi\|195936350\|ref\|ZP_03081732.1\| phosphate transporter subunit [Escherichia coli O157:H7 str. EC4024] gi\|12518575, gi\|... - gi\|15804321\|ref\|NP_290360.1\| phosphate transporter subunit [Escherichia coli O157:H7 EDL933], gi\|125... gi\|208727384, gi... - gi\|208807583\|ref\|ZP_03249920.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Pst... gi\|168759919, gi... - gi\|189369943\|gb\|EDU88359.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|168766219, gi... - gi\|189364474\|gb\|EDU82893.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|168772232, gi... - gi\|187771542\|gb\|EDU35386.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|168779954, gi... - gi\|189002334\|gb\|EDU71320.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|188016996, gi... - gi\|188016996\|gb\|EDU55118.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|189359296, gi... - gi\|189359296\|gb\|EDU77715.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|254595126, gi... - gi\|254795726\|ref\|YP_003080563.1\| phosphate transporter subunit; periplasmic-binding component of ABC... gi\|15833918, gi\|... - gi\|15833918\|ref\|NP_312691.1\| phosphate ABC transporter periplasmic substrate-binding protein PstS [E...	337.0	[0..1]	[346..1]
gi\|75514206, gi\|... - gi\|75514206\|ref\|ZP_00736514.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	337.0	[0..1]	[346..1]
gi\|83571517, gi\|... - gi\|83571517\|ref\|ZP_00922957.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	336.0	[0..1]	[346..1]
gi\|238797866, gi... - gi\|77961812\|ref\|ZP_00825642.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	336.0	[0..1]	[346..1]
gi\|110644069, gi... - gi\|110644069\|ref\|YP_671799.1\| phosphate ABC transporter periplasmic substrate-binding protein PstS [... gi\|75242484, gi\|... - gi\|75242484\|ref\|ZP_00726228.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	336.0	[0..1]	[346..1]
gi\|110617125, gi... - gi\|110807577\|ref\|YP_691097.1\| phosphate transporter subunit [Shigella flexneri 5 str. 8401], gi\|1106...	335.0	[0..1]	[346..1]

Back

Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVMRTTVAT VVAATLSMSA FSVFAEASLT GAGATFPAPV YAKWADTYQK ETGNKVNYQG  60
   61 IGSSGGVKQI IANTVDFGAS DAPLSDEKLA QEGLFQFPTV IGGVVLAVNI PGLKSGELVL 120
  121 DGKTLGDIYL GKIKKWDDEA IAKLNPGLKL PSQNIAVVRR ADGSGTSFVF TSYLAKVNEE 180
  181 WKNNVGTGST VKWPIGLGGK GNDGIAAFVQ RLPGAIGYVE YAYAKQNNLA YTKLISADGK 240
  241 PVSPTEENFA NAAKGADWSK TFAQDLTNQK GEDAWPITST TFILIHKDQK KPEQGTEVLK 300
  301 FFDWAYKTGA KQANDLDYAS LPDSVVEQVR AAWKTNIKDS SGKPLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.69897
Match:	1a54A
Description:	Phosphate-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.144254316055515	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: