YRC Public Data Repository - Protein Structure Prediction

Protein:	PQQL_ECOLI
Organism:	Escherichia coli
Length:	931 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PQQL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37523707, gi\|... - gi\|37523707\|ref\|NP_927084.1\| proteinase [Gloeobacter violaceus PCC 7421], gi\|35214712\|dbj\|BAC92079.1...	613.0	[0..6]	[927..21]
gi\|94263588, gi\|... - gi\|94263588\|ref\|ZP_01287398.1\| Peptidase M16-like [delta proteobacterium MLMS-1], gi\|93456008\|gb\|EAT...	586.0	[0..5]	[929..9]
gi\|53688220 - gi\|53688220\|ref\|ZP_00110048.2\| COG0612: Predicted Zn-dependent peptidases [Nostoc punctiforme PCC 73...	578.0	[0..17]	[931..23]
gi\|75703608, gi\|... - gi\|75909883\|ref\|YP_324179.1\| peptidase M16-like [Anabaena variabilis ATCC 29413], gi\|75703608\|gb\|ABA...	573.0	[0..33]	[929..61]
gi\|108463120, gi... - gi\|108759240\|ref\|YP_629401.1\| M16 family peptidase [Myxococcus xanthus DK 1622], gi\|108463120\|gb\|ABF...	563.0	[0..37]	[929..71]
gi\|17228516, gi\|... - gi\|17228516\|ref\|NP_485064.1\| hypothetical protein all1021 [Nostoc sp. PCC 7120], gi\|17130367\|dbj\|BAB... gi\|25290050 - pir\|\|AB1934 hypothetical protein all1021 [imported] - Nostoc sp. (strain PCC 7120)	563.0	[0..33]	[929..61]
gi\|22297595, gi\|... - gi\|22297595\|ref\|NP_680842.1\| hypothetical protein tlr0051 [Thermosynechococcus elongatus BP-1], gi\|2...	559.0	[0..2]	[929..8]
gi\|115374347, gi... - gi\|115374347\|ref\|ZP_01461631.1\| zinc protease [Stigmatella aurantiaca DW4/3-1], gi\|115368657\|gb\|EAU6...	543.0	[0..65]	[929..2]
gi\|113897497, gi... - gi\|159899325\|ref\|YP_001545572.1\| peptidase M16 domain-containing protein [Herpetosiphon aurantiacus ...	543.0	[0..34]	[930..4]

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Predicted Domain #1

Region A:
Residues: [1-931]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIIMRNLCF LLTLVATLLL PGRLIAAALP QDEKLITGQL DNGLRYMIYP HAHPKDQVNL  60
   61 WLQIHTGSLQ EEDNELGVAH FVEHMMFNGT KTWPGNKVIE TFESMGLRFG RDVNAYTSYD 120
  121 ETVYQVSLPT TQKQNLQQVM AIFSEWSNAA TFEKLEVDAE RGVITEEWRA HQDAKWRTSQ 180
  181 ARRPFLLANT RNLDREPIGL MDTVATVTPA QLRQFYQRWY QPNNMTFIVV GDIDSKEALA 240
  241 LIKDNLSKLP ANKAAENRVW PTKAENHLRF NIINDKENRV NGIALYYRLP MVQVNDEQSF 300
  301 IEQAEWSMLV QLFNQRLQER IQSGELKTIS GGTARSVKIA PDYQSLFFRV NARDDNMQDA 360
  361 ANALMAELAT IDQHGFSAEE LDDVKSTRLT WLKNAVDQQA ERDLRMLTSR LASSSLNNTP 420
  421 FLSPEETYQL SKRLWQQITV QSLAEKWQQL RKNQDAFWEQ MVNNEVAAKK ALSPAAILAL 480
  481 EKEYANKKLA AYVFPGRNLS LTVDADPQAE ISSKETLAEN LTSLTLSNGA RVILAKSAGE 540
  541 EQKLQIIAVS NKGDLSFPAQ QKSLIALANK AVSGSGVGEL SSSSLKRWSA ENSVTMSSKV 600
  601 SGMNTLLSVS ARTNNPEPGF QLINQRITHS TINDNIWASL QNAQIQALKT LDQRPAEKFA 660
  661 QQMYETRYAD DRTKLLQENQ IAQFTAADAL AADRQLFSSP ADITFVIVGN VAEDKLVALI 720
  721 TRYLGSIKHS DSPLAAGKPL TRATDNASVT VKEQNEPVAQ VSQWKRYDSR TPVNLPTRMA 780
  781 LDAFNVALAK DLRVNIREQA SGAYSVSSRL SVDPQAKDIS HLLAFTCQPE RHDELLTLAN 840
  841 EVMVKRLAKG ISEQELNEYQ QNVQRSLDIQ QRSVQQLANT IVNSLIQYDD PAAWTEQEQL 900
  901 LKQMTVENVN TAVKQYLSHP VNTYTGVLLP K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	127.0
Match:	2g47A
Description:	No description for 2g47A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits