YRC Public Data Repository - Protein Structure Prediction

Protein:	PQIA_ECOLI
Organism:	Escherichia coli
Length:	417 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PQIA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15800809, gi\|... - gi\|15800809\|ref\|NP_286825.1\| paraquat-inducible protein A [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|218700531, gi... - gi\|218700531\|ref\|YP_002408160.1\| paraquat-inducible membrane protein A [Escherichia coli IAI39], gi\|... gi\|217326375, gi... - gi\|217326375\|ref\|ZP_03442459.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. TW14588]... gi\|170518506, gi... - gi\|170680788\|ref\|YP_001744219.1\| paraquat-inducible protein A [Escherichia coli SMS-3-5], gi\|1705185... gi\|189372598, gi... - gi\|189372598\|gb\|EDU91014.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|187768378, gi... - gi\|187768378\|gb\|EDU32222.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|168762911, gi... - gi\|189366777\|gb\|EDU85193.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|209157472, gi... - gi\|209396072\|ref\|YP_002269619.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4115]... gi\|208738264, gi... - gi\|208822779\|ref\|ZP_03263098.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4042],... gi\|208816359, gi... - gi\|208816359\|ref\|ZP_03257538.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4045],... gi\|82776241, gi\|... - gi\|82776241\|ref\|YP_402590.1\| paraquat-inducible protein A [Shigella dysenteriae Sd197], gi\|81240389\|... gi\|208808193, gi... - gi\|208808193\|ref\|ZP_03250530.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4206],... gi\|13360494, gi\|... - gi\|15830288\|ref\|NP_309061.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168758976, gi... - gi\|189354324\|gb\|EDU72743.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|13360494, gi\|... - gi\|15830288\|ref\|NP_309061.1\| paraquat-inducible protein A [Escherichia coli O157:H7], gi\|13360494\|db... gi\|25321509, gi\|... - pir\|\|H85621 paraquat-inducible protein A [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|254792150, gi... - gi\|254792150\|ref\|YP_003076987.1\| paraquat-inducible membrane protein A [Escherichia coli O157:H7 str...	413.0	[0..1]	[417..1]
gi\|194435234, gi... - gi\|83568922\|ref\|ZP_00920390.1\| COG2995: Uncharacterized paraquat-inducible protein A [Shigella dysen...	410.0	[0..1]	[417..1]
gi\|91071619, gi\|... - gi\|91210045\|ref\|YP_540031.1\| paraquat-inducible protein A [Escherichia coli UTI89], gi\|91071619\|gb\|A... gi\|218557848, gi... - gi\|218557848\|ref\|YP_002390761.1\| paraquat-inducible membrane protein A [Escherichia coli S88], gi\|21... gi\|226898277, gi... - gi\|237707067\|ref\|ZP_04537548.1\| paraquat-inducible protein A [Escherichia sp. 3_2_53FAA], gi\|2268982... gi\|117623161, gi... - gi\|117623161\|ref\|YP_852074.1\| paraquat-inducible protein A [Escherichia coli APEC O1], gi\|115512285\|...	410.0	[0..1]	[417..1]
gi\|187428005, gi... - gi\|75178236\|ref\|ZP_00698290.1\| COG2995: Uncharacterized paraquat-inducible protein A [Shigella boydi...	410.0	[0..1]	[417..1]
gi\|74311507, gi\|... - gi\|74311507\|ref\|YP_309926.1\| paraquat-inducible protein A [Shigella sonnei Ss046], gi\|73854984\|gb\|AA...	410.0	[0..1]	[417..1]
gi\|197936660, gi... - gi\|198242144\|ref\|YP_002214996.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica s... gi\|199602812, gi... - gi\|200390367\|ref\|ZP_03216978.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica se... gi\|205271999, gi... - gi\|205352218\|ref\|YP_002226019.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|205359283, gi... - gi\|205359283\|ref\|ZP_02668783.2\| paraquat-inducible protein A [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=pqiA] [protein=paraquat-inducible protein A] [protein_id=YP_005236795.1] [location=1112272..11... gi\|194446385, gi... - gi\|194446385\|ref\|YP_002040266.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica s... gi\|194410142, gi... - gi\|194451838\|ref\|YP_002045065.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica s... gi\|197211644, gi... - gi\|197247941\|ref\|YP_002145933.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica s... gi\|197240970, gi... - gi\|197262715\|ref\|ZP_03162789.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica se... gi\|161364107, gi... - gi\|161614743\|ref\|YP_001588708.1\| hypothetical protein SPAB_02495 [Salmonella enterica subsp. enteric... gi\|205328525, gi... - gi\|205328525\|gb\|EDZ15289.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica serova... gi\|168264747, gi... - gi\|205346844\|gb\|EDZ33475.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica serova... gi\|16502238, gi\|... - gi\|25321517\|pir\|\|AB0626 probable inner membrane protein STY1084 [imported] - Salmonella enterica sub... gi\|214001677 - gi\|214001677\|ref\|ZP_03412412.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|16764422, gi\|... - gi\|16764422\|ref\|NP_460037.1\| paraquat-inducible protein A [Salmonella typhimurium LT2], gi\|16419578\|... gi\|213418449 - gi\|213418449\|ref\|ZP_03351515.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|213425908 - gi\|213425908\|ref\|ZP_03358658.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|29137914, gi\|... - gi\|29142284\|ref\|NP_805626.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|213611229 - gi\|213611229\|ref\|ZP_03370055.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|16759944 - gi\|16759944\|ref\|NP_455561.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|213646601 - gi\|213646601\|ref\|ZP_03376654.1\| putative inner membrane protein [Salmonella enterica subsp. enterica...	402.0	[0..1]	[417..1]
gi\|56128197, gi\|... - gi\|56413940\|ref\|YP_151015.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|197094340, gi... - gi\|197362863\|ref\|YP_002142500.1\| putative inner membrane protein [Salmonella enterica subsp. enteric...	402.0	[0..1]	[417..1]
gi\|77956754 - gi\|77956754\|ref\|ZP_00820834.1\| COG2995: Uncharacterized paraquat-inducible protein A [Yersinia berco...	401.0	[0..3]	[416..8]
gi\|91188860, gi\|... - gi\|91226897\|ref\|ZP_01261494.1\| paraquat-inducible protein A [Vibrio alginolyticus 12G01], gi\|9118886...	399.0	[0..1]	[412..1]
gi\|62179585, gi\|... - gi\|62179585\|ref\|YP_216002.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica serov...	397.0	[0..1]	[417..1]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCEHHHAAKH ILCSQCDMLV ALPRLEHGQK AACPRCGTTL TVAWDAPRQR PTAYALAALF  60
   61 MLLLSNLFPF VNMNVAGVTS EITLLEIPGV LFSEDYASLG TFFLLFVQLV PAFCLITILL 120
  121 LVNRAELPVR LKEQLARVLF QLKTWGMAEI FLAGVLVSFV KLMAYGSIGV GSSFLPWCLF 180
  181 CVLQLRAFQC VDRRWLWDDI APMPE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [206-417]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRQPLKPGVT GIRQGLRSCS CCTAILPADE PVCPRCSTKG YVRRRNSLQW TLALLVTSIM  60
   61 LYLPANILPI MVTDLLGSKM PSTILAGVIL LWSEGSYPVA AVIFLASIMV PTLKMIAIAW 120
  121 LCWDAKGHGK RDSERMHLIY EVVEFVGRWS MIDVFVIAVL SALVRMGGLM SIYPAMGALM 180
  181 FALVVIMTMF SAMTFDPRLS WDRQPESEHE ES

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	110.823909
Match:	PF04403.4
Description:	No description for PF04403.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits