YRC Public Data Repository - Protein Structure Prediction

Protein:	PPNK_SALTI
Organism:	Salmonella typhi
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPNK_SALTI.

Description	E-value	Query Range	Subject Range
NADK_SHIBS - NAD kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=nadK PE=3 SV=1	0.0	[1..292]	[1..292]
NADK_ECO27 - NAD kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nadK PE=3 SV=1 NADK_ECOL6 - NAD kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nadK PE=3 SV=1 NADK_ECO45 - NAD kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nadK PE=3 SV=1 NADK_ECO81 - NAD kinase OS=Escherichia coli O81 (strain ED1a) GN=nadK PE=3 SV=1 NADK_ECOL5 - NAD kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nadK PE=3 SV=1 gi\|190908335, gi... - gi\|191171401\|ref\|ZP_03032950.1\| NAD(+) kinase [Escherichia coli F11], gi\|190908335\|gb\|EDV67925.1\| NA... PPNK_ECOL6 - Probable inorganic polyphosphate/ATP-NAD kinase OS=Escherichia coli O6 GN=ppnK PE=3 SV=1 NADK_ECOK1 - NAD kinase OS=Escherichia coli O1:K1 / APEC GN=nadK PE=3 SV=1 gi\|237706798, gi... - gi\|237706798\|ref\|ZP_04537279.1\| inorganic polyphosphate/ATP-NAD kinase [Escherichia sp. 3_2_53FAA], ... NADK_ECOUT - NAD kinase OS=Escherichia coli (strain UTI89 / UPEC) GN=nadK PE=3 SV=1 sp\|B7UH63\|PPNK_ECO27 - Probable inorganic polyphosphate/ATP-NAD kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)...	0.0	[1..292]	[1..292]
PPNK_ERWCT - Probable inorganic polyphosphate/ATP-NAD kinase OS=Erwinia carotovora subsp. atroseptica GN=ppnK PE=... NADK_PECAS - NAD kinase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=nadK PE=3 SV=1	0.0	[1..292]	[1..292]
NADK_ECOHS - NAD kinase OS=Escherichia coli O9:H4 (strain HS) GN=nadK PE=3 SV=1 NADK_ECO24 - NAD kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nadK PE=3 SV=1 PPNK_ECOLI - Probable inorganic polyphosphate/ATP-NAD kinase (EC 2.7.1.23) (Poly(P)/ATP NAD kinase) - Escherichia... gi\|89109415, gi\|... - gi\|89109415\|ref\|AP_003195.1\| NAD kinase [Escherichia coli str. K-12 substr. W3110], gi\|1800020\|dbj\|B... NADK_SHIF8 - NAD kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=nadK PE=3 SV=1 NADK_SHIFL - NAD kinase OS=Shigella flexneri GN=nadK PE=3 SV=1 NADK_ECOBW - NAD kinase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=nadK PE=3 SV=1 gi\|24113952, gi\|... - gi\|24113952\|ref\|NP_708462.1\| inorganic polyphosphate/ATP-NAD kinase [Shigella flexneri 2a str. 301],... gi\|251785936, gi... - gi\|251785936\|ref\|YP_003000240.1\| hypothetical protein B21_02467 [Escherichia coli BL21], gi\|24237820... gi\|30064013, gi\|... - gi\|30064013\|ref\|NP_838184.1\| inorganic polyphosphate/ATP-NAD kinase [Shigella flexneri 2a str. 2457T... gi\|254289345, gi... - gi\|254289345\|ref\|YP_003055093.1\| inorganic polyphosphate/ATP-NAD kinase [Escherichia coli BL21(DE3)]... EG12192 - NAD kinase / ATP-NAD kinase gi\|253974485, gi... - gi\|254162584\|ref\|YP_003045692.1\| inorganic polyphosphate/ATP-NAD kinase [Escherichia coli B str. REL... NADK_ECO8A - NAD kinase OS=Escherichia coli O8 (strain IAI1) GN=nadK PE=3 SV=1 NADK_ECO55 - NAD kinase OS=Escherichia coli (strain 55989 / EAEC) GN=nadK PE=3 SV=1 NADK_ECOLU - NAD kinase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=nadK PE=3 SV=1 NADK_SHISS - NAD kinase OS=Shigella sonnei (strain Ss046) GN=nadK PE=3 SV=1 gi\|194414118, gi... - gi\|194427885\|ref\|ZP_03060431.1\| NAD(+) kinase [Escherichia coli B171], gi\|194414118\|gb\|EDX30394.1\| N... gi\|194433062, gi... - gi\|194433062\|ref\|ZP_03065345.1\| NAD(+) kinase [Shigella dysenteriae 1012], gi\|194418789\|gb\|EDX34875.... gi\|194439424, gi... - gi\|194439424\|ref\|ZP_03071500.1\| NAD(+) kinase [Escherichia coli 101-1], gi\|194421600\|gb\|EDX37611.1\| ... NADK_ECOSE - NAD kinase OS=Escherichia coli (strain SE11) GN=nadK PE=3 SV=1 gi\|124528013, gi... - gi\|124528013\|ref\|ZP_01699366.1\| NAD(+) kinase [Escherichia coli B], gi\|124500905\|gb\|EAY48373.1\| NAD(... NADK_ECODH - NAD kinase OS=Escherichia coli (strain K12 / DH10B) GN=nadK PE=3 SV=1 NADK_SHIB3 - NAD kinase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=nadK PE=3 SV=1 EG12192 - NAD kinase / ATP-NAD kinase NADK_ECOLC - NAD kinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nadK PE=3 SV=1	0.0	[1..292]	[1..292]
NADK_SHIDS - NAD kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nadK PE=3 SV=1	0.0	[1..292]	[1..292]
PPNK_SALCH - Probable inorganic polyphosphate/ATP-NAD kinase OS=Salmonella choleraesuis GN=ppnK PE=3 SV=2 NADK_SALCH - NAD kinase OS=Salmonella choleraesuis (strain SC-B67) GN=nadK PE=3 SV=2 PPNK_SALCH - Probable inorganic polyphosphate/ATP-NAD kinase OS=Salmonella choleraesuis GN=ppnK PE=3 SV=2	0.0	[1..292]	[1..292]
gi\|77963361, gi\|... - gi\|77963361\|ref\|ZP_00827171.1\| COG0061: Predicted sugar kinase [Yersinia mollaretii ATCC 43969], gi\|...	0.0	[2..292]	[3..293]
gi\|208727793, gi... - gi\|208807992\|ref\|ZP_03250329.1\| NAD(+) kinase [Escherichia coli O157:H7 str. EC4206], gi\|208727793\|g... gi\|208812883, gi... - gi\|208812883\|ref\|ZP_03254212.1\| NAD(+) kinase [Escherichia coli O157:H7 str. EC4045], gi\|208734160\|g... gi\|208740357, gi... - gi\|208820234\|ref\|ZP_03260554.1\| NAD(+) kinase [Escherichia coli O157:H7 str. EC4042], gi\|208740357\|g... gi\|254794560, gi... - gi\|254794560\|ref\|YP_003079397.1\| ATP-NAD kinase [Escherichia coli O157:H7 str. TW14359], gi\|25459396... NADK_ECO5E - NAD kinase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=nadK PE=3 SV=1 gi\|168778592, gi... - gi\|189003347\|gb\|EDU72333.1\| NAD(+) kinase [Escherichia coli O157:H7 str. EC4076], gi\|168778592\|ref\|Z... gi\|189370860, gi... - gi\|189370860\|gb\|EDU89276.1\| NAD(+) kinase [Escherichia coli O157:H7 str. EC869], gi\|168789517\|ref\|ZP... gi\|189377155, gi... - gi\|189377155\|gb\|EDU95571.1\| NAD(+) kinase [Escherichia coli O157:H7 str. EC508], gi\|168800494\|ref\|ZP... gi\|195939666 - gi\|195939666\|ref\|ZP_03085048.1\| inorganic polyphosphate/ATP-NAD kinase [Escherichia coli O157:H7 str... gi\|168755357, gi... - gi\|189357319\|gb\|EDU75738.1\| NAD(+) kinase [Escherichia coli O157:H7 str. EC4401], gi\|168755357\|ref\|Z... gi\|189367220, gi... - gi\|189367220\|gb\|EDU85636.1\| NAD(+) kinase [Escherichia coli O157:H7 str. EC4501], gi\|168762407\|ref\|Z... gi\|168768702, gi... - gi\|189362032\|gb\|EDU80451.1\| NAD(+) kinase [Escherichia coli O157:H7 str. EC4486], gi\|168768702\|ref\|Z... gi\|25305173, gi\|... - pir\|\|E91063 NAD kinase (EC 2.7.1.23) - Escherichia coli (strain O157:H7, substrain RIMD 0509952), p... gi\|12517039, gi\|... - gi\|15803135\|ref\|NP_289167.1\| inorganic polyphosphate/ATP-NAD kinase [Escherichia coli O157:H7 EDL933... gi\|13362948, gi\|... - gi\|15832731\|ref\|NP_311504.1\| inorganic polyphosphate/ATP-NAD kinase [Escherichia coli O157:H7 str. S... NADK_ECO57 - NAD kinase OS=Escherichia coli O157:H7 GN=nadK PE=3 SV=1 gi\|217319434, gi... - gi\|217327067\|ref\|ZP_03443150.1\| NAD(+) kinase [Escherichia coli O157:H7 str. TW14588], gi\|217319434\|...	0.0	[1..292]	[1..292]
gi\|238714882, gi... - gi\|77958603\|ref\|ZP_00822634.1\| COG0061: Predicted sugar kinase [Yersinia bercovieri ATCC 43970], gi\|...	0.0	[2..292]	[3..293]
PPNK_PHOLL - Probable inorganic polyphosphate/ATP-NAD kinase OS=Photorhabdus luminescens subsp. laumondii GN=ppnK... NADK_PHOLL - NAD kinase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) GN=na...	0.0	[1..292]	[1..292]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNHFKCIGI VGHPRHPTAL TTHEMLYRWL CDQGYEVIVE QQIAHELQLK NVPTGTLAEI  60
   61 GQQADLAVVV GGDGNMLGAA RTLARYDINV IGINRGNLGF LTDLDPDNAL QQLSDVLEGR 120
  121 YISEKRFLLE AQVCQQDRQK RISTAINEVV LHPGKVAHMI EFEVYIDETF AFSQRSDGLI 180
  181 ISTPTGSTAY SLSAGGPILT PSLDAITLVP MFPHTLSARP LVINSSSTIR LRFSHRRSDL 240
  241 EISCDSQIAL PIQEGEDVLI RRCDYHLNLI HPKDYSYFNT LSTKLGWSKK LF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	2an1A
Description:	Structural Genomics, The crystal structure of a putative kinase from Salmonella typhimurim LT2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits