YRC Public Data Repository - Protein Structure Prediction

Protein:	PNTB_ECOLI
Organism:	Escherichia coli
Length:	462 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNTB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218689548, gi... - gi\|218689548\|ref\|YP_002397760.1\| pyridine nucleotide transhydrogenase [Escherichia coli ED1a], gi\|21... gi\|110641724, gi... - gi\|110641724\|ref\|YP_669454.1\| pyridine nucleotide transhydrogenase [Escherichia coli 536], gi\|110343... gi\|191174334, gi... - gi\|75236687\|ref\|ZP_00720766.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli F11... gi\|215264850, gi... - gi\|215486778\|ref\|YP_002329209.1\| pyridine nucleotide transhydrogenase [Escherichia coli O127:H6 str....	717.0	[0..1]	[462..1]
gi\|82544031, gi\|... - gi\|82544031\|ref\|YP_407978.1\| pyridine nucleotide transhydrogenase [Shigella boydii Sb227], gi\|812454...	716.0	[0..1]	[462..1]
gi\|192956443, gi... - gi\|75234915\|ref\|ZP_00719194.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E11...	716.0	[0..1]	[462..1]
gi\|190904067, gi... - gi\|75230949\|ref\|ZP_00717398.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B7A...	715.0	[0..1]	[462..1]
gi\|37526084, gi\|... - gi\|37526084\|ref\|NP_929428.1\| pyridine nucleotide transhydrogenase [Photorhabdus luminescens subsp. l...	708.0	[0..1]	[462..1]
gi\|29141853, gi\|... - gi\|29141853\|ref\|NP_805195.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|56127812, gi\|... - gi\|56413555\|ref\|YP_150630.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|16760383 - gi\|16760383\|ref\|NP_456000.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|16502678, gi\|... - gi\|25284880\|pir\|\|AI0682 NAD(P) transhydrogenase (B-specific) (EC 1.6.1.1) - Salmonella enterica subs... gi\|16419999, gi\|... - gi\|16764825\|ref\|NP_460440.1\| pyridine nucleotide transhydrogenase [Salmonella typhimurium LT2], gi\|1... gi\|238911712 - gi\|238911712\|ref\|ZP_04655549.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|168229859, gi... - gi\|205335518\|gb\|EDZ22282.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|205327685, gi... - gi\|205327685\|gb\|EDZ14449.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|167551545, gi... - gi\|205323549\|gb\|EDZ11388.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|161614096, gi... - gi\|161614096\|ref\|YP_001588061.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|195634188, gi... - gi\|195634188\|gb\|EDX52540.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|168260356, gi... - gi\|205350940\|gb\|EDZ37571.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|205339540, gi... - gi\|205339540\|gb\|EDZ26304.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|168235559, gi... - gi\|197291149\|gb\|EDY30502.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=pntB] [protein=pyridine nucleotide transhydrogenase] [protein_id=YP_005237357.1] [location=156... gi\|161503424, gi... - gi\|161503424\|ref\|YP_001570536.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ar... gi\|213609351 - gi\|213609351\|ref\|ZP_03369177.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|213424137 - gi\|213424137\|ref\|ZP_03357019.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|205352810, gi... - gi\|205352810\|ref\|YP_002226611.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|204927632, gi... - gi\|204927632\|ref\|ZP_03218833.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|224468540, gi... - gi\|224584013\|ref\|YP_002637811.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|213999332 - gi\|213999332\|ref\|ZP_03410067.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|194457033, gi... - gi\|194470669\|ref\|ZP_03076653.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|194408065, gi... - gi\|194449761\|ref\|YP_002045516.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|194444194, gi... - gi\|194444194\|ref\|YP_002040727.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e... gi\|205343863, gi... - gi\|205343863\|gb\|EDZ30627.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|199602297, gi... - gi\|200389852\|ref\|ZP_03216463.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|197241783, gi... - gi\|197263528\|ref\|ZP_03163602.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|197251418, gi... - gi\|197251418\|ref\|YP_002146565.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e... gi\|194710685, gi... - gi\|194735183\|ref\|YP_002114494.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e...	707.0	[0..1]	[462..1]
gi\|62127701, gi\|... - gi\|62180068\|ref\|YP_216485.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri...	706.0	[0..1]	[462..1]
gi\|102621429 - gi\|102621429\|gb\|ABF71059.1\| NADP transhydrogenase beta subunit [Enterobacter cloacae]	706.0	[0..1]	[462..1]
gi\|162418619, gi... - gi\|77636206\|ref\|ZP_00798282.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pestis Ango... gi\|25284883 - pir\|\|AG0280 NAD(P) transhydrogenase (AB-specific) (EC 1.6.1.2) - Yersinia pestis (strain CO92) gi\|45436745, gi\|... - gi\|45441882\|ref\|NP_993421.1\| pyridine nucleotide transhydrogenase [Yersinia pestis biovar Microtus s... gi\|22126022, gi\|... - gi\|22126022\|ref\|NP_669445.1\| pyridine nucleotide transhydrogenase [Yersinia pestis KIM], gi\|21958971... gi\|218929394, gi... - gi\|218929394\|ref\|YP_002347269.1\| pyridine nucleotide transhydrogenase [Yersinia pestis CO92], gi\|161... gi\|51596548, gi\|... - gi\|51596548\|ref\|YP_070739.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis IP 32... gi\|229688671, gi... - gi\|229898381\|ref\|ZP_04513528.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|229894980, gi... - gi\|229894980\|ref\|ZP_04510158.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|229837820, gi... - gi\|229837820\|ref\|ZP_04457979.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|152958614, gi... - gi\|77629298\|ref\|ZP_00791884.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pseudotuber... gi\|149292198, gi... - gi\|149365785\|ref\|ZP_01887820.1\| NAD(P) transhydrogenase subunit beta [Yersinia pestis CA88-4125], gi... gi\|145209839, gi... - gi\|145598143\|ref\|YP_001162219.1\| pyridine nucleotide transhydrogenase [Yersinia pestis Pestoides F],... Q66AA8\|Q66AA8_YERPS - NAD(P) transhydrogenase subunit beta precursor - Yersinia pseudotuberculosis gi\|89104625, gi\|... - gi\|89104625\|ref\|ZP_01177163.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pestis biov... gi\|108779559, gi... - gi\|108807646\|ref\|YP_651562.1\| pyridine nucleotide transhydrogenase [Yersinia pestis Antiqua], gi\|108... gi\|165920845, gi... - gi\|165927177\|ref\|ZP_02223009.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Orient... gi\|108811925, gi... - gi\|229902228\|ref\|ZP_04517349.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|165990317, gi... - gi\|166010615\|ref\|ZP_02231513.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|166210796, gi... - gi\|166210796\|ref\|ZP_02236831.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|167400947, gi... - gi\|167400947\|ref\|ZP_02306453.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|166958926, gi... - gi\|167422114\|ref\|ZP_02313867.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Orient... gi\|167056020, gi... - gi\|167424833\|ref\|ZP_02316586.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Mediae... gi\|167469358 - gi\|167469358\|ref\|ZP_02334062.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis FV-1] gi\|169750713, gi... - gi\|170024179\|ref\|YP_001720684.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis Y... gi\|186895608, gi... - gi\|186895608\|ref\|YP_001872720.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis P...	695.0	[0..1]	[462..1]
gi\|85059465, gi\|... - gi\|85059465\|ref\|YP_455167.1\| pyridine nucleotide transhydrogenase [Sodalis glossinidius str. 'morsit...	693.0	[0..1]	[462..1]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGLVTAAY IVAAILFIFS LAGLSKHETS RQGNNFGIAG MAIALIATIF GPDTGNVGWI  60
   61 LLAMVIGGAI GIRLAKKVEM TEMPELVAIL HSFVGLAAVL VGFNSYLHHD AGMAPILVNI 120
  121 HLTEVFLGIF IGAVTFTGSV VAFGKLCGKI SSKPLMLPNR HKMNLAALVV SFLLLIVFVR 180
  181 TDSVGLQVLA L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [192-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIMTAIALVF GWHLVASIGG ADMPVVVSML NSYSGWAAAA AGFMLSNDLL IVTGALVGSS  60
   61 GAILSYIMCK AMNRSFISVI AGGFG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [277-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDGSSTGDDQ EVGEHREITA EETAELLKNS HSVIITPGYG MAVAQAQYPV AEITEKLRAR  60
   61 GINVRFGIHP VAGRLPGHMN VLLAEAKVPY DIVLEMDEIN DDFADTDTVL VIGANDTVNP 120
  121 AAQDDPKSPI AGMPVLEVWK AQNVIVFKRS MNTGYAGVQN PLFFKENTHM LFGDAKASVD 180
  181 AILKAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.522879
Match:	2bruC
Description:	No description for 2bruC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits